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Sample GSM4073343 Query DataSets for GSM4073343
Status Public on Mar 26, 2021
Title Biopsy patient3 lesional skin day 84
Sample type RNA
 
Source name Lesional skin punch biopsy day 84
Organism Homo sapiens
Characteristics patient diagnosis: psoriasis
tissue: skin
gender: Female
disease state (ls/nl): LS
day: 84
Extracted molecule total RNA
Extraction protocol Total RNA from skin biopsies was isolated using the SV Total RNA Isolation System according to the manufacturer's instructions.
Label Biotin
Label protocol Biotinylated cRNA was prepared according to the protocol for the human Clariom D assay (ThermoFisher Scientific).
 
Hybridization protocol Following fragmentation, cRNA was hybridized for 16 hr at 45C on the human Clariom D GeneChip according to the manufacturer's instructions.
Scan protocol GeneChips were scanned using the GeneChip Scanner 3000 system.
Description Gene expression data from lesional psoriatic skin at day 84
Data processing The microarray data were summarized applying the SST-RMA (signal space transformation - robust multi-array average) gene level method as implemented in the Transcriptome Analysis Console (TAC) 4.0 software (ThermoFisher Scientific).
 
Submission date Sep 10, 2019
Last update date Mar 27, 2021
Contact name Thomas Litman
E-mail(s) tlitman@hotmail.com
Phone 4541851753
Organization name University of Copenhagen
Department ISIM
Street address Blegdamsvej 3C
City Copenhagen N
State/province Outside the US or Canada
ZIP/Postal code 2200
Country Denmark
 
Platform ID GPL23126
Series (2)
GSE137218 Skin expression data from psoriasis patients treated with secukinumab
GSE137221 Skin and blood expression data from psoriasis patients treated with secukinumab

Data table header descriptions
ID_REF
VALUE SST-RMA

Data table
ID_REF VALUE
AFFX-BkGr-GC03_st 8.45107
AFFX-BkGr-GC04_st 7.0985
AFFX-BkGr-GC05_st 5.95027
AFFX-BkGr-GC06_st 5.20722
AFFX-BkGr-GC07_st 4.51368
AFFX-BkGr-GC08_st 3.86668
AFFX-BkGr-GC09_st 3.47951
AFFX-BkGr-GC10_st 3.09994
AFFX-BkGr-GC11_st 2.88312
AFFX-BkGr-GC12_st 2.68373
AFFX-BkGr-GC13_st 2.47506
AFFX-BkGr-GC14_st 2.33501
AFFX-BkGr-GC15_st 2.28783
AFFX-BkGr-GC16_st 2.37149
AFFX-BkGr-GC17_st 2.37666
AFFX-BkGr-GC18_st 2.48526
AFFX-BkGr-GC19_st 2.78271
AFFX-BkGr-GC20_st 2.78542
AFFX-BkGr-GC21_st 2.93974
AFFX-BkGr-GC22_st 3.52445

Total number of rows: 138745

Table truncated, full table size 3533 Kbytes.




Supplementary file Size Download File type/resource
GSM4073343_A3739-18.CEL.gz 24.6 Mb (ftp)(http) CEL
GSM4073343_A3739-18.CHP.gz 890.8 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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