|
| Status |
Public on Sep 12, 2019 |
| Title |
CHIP ZNF2 FLAG rep 2 input |
| Sample type |
SRA |
| |
|
| Source name |
XL280 grown in V8
|
| Organism |
Cryptococcus neoformans |
| Characteristics |
cell type: filamentous cells
antibody: ZNF2-FLAG
|
| Growth protocol |
V8
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Nuclei were isolated and Nextera sequencing adapters were integrated via pre-loaded Tn5
|
| |
|
| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina NextSeq 500 |
| |
|
| Description |
CHIP ZNF2 FLAG rep 2 input
WT_Znf2Peaks_Rep2_L2.5_localsize_20000.txt
|
| Data processing |
Reads were aligned with HISAT2
Visulization tracks were created with deepTools, normalized by FPKM
ATAC peaks were called with MACS
ChIP peaks were called with HOMER
Genome_build: GCF_000091045.1
Supplementary_files_format_and_content: peaks
|
| |
|
| Submission date |
Sep 11, 2019 |
| Last update date |
Sep 12, 2019 |
| Contact name |
Zachary A Lewis |
| E-mail(s) |
zacharyaustinlewis@gmail.com
|
| Organization name |
University of Georgia
|
| Department |
Microbiology
|
| Lab |
Lewis
|
| Street address |
1000 Cedar St. Biosciences Bldg
|
| City |
Athens |
| State/province |
GA |
| ZIP/Postal code |
30602 |
| Country |
USA |
| |
|
| Platform ID |
GPL27451 |
| Series (1) |
| GSE137248 |
Transcription factor Znf2 coordinates with the chromatin remodeling SWI/SNF complex to regulate differentiation in Cryptococcus neoformans |
|
| Relations |
| BioSample |
SAMN12726900 |
| SRA |
SRX6829529 |
