NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM40745 Query DataSets for GSM40745
Status Public on Feb 03, 2005
Title Cre Mlo-1
Sample type RNA
 
Source name Interleukin-7 expanded murine bone marrow cells
Organism Mus musculus
Extracted molecule total RNA
 
Description Interleukin-7 expanded bone marrow immature B cells from B1-8h/3-83(kappa)/Mx-Cre mice were recultured in the absence of interleukin-7 and in the presence of interferon-(alpha)(beta) for 2 days and sorted by FACS for surface IgM low expression. The U74Av2 probe arrays were subjected to U74A mask corrections, and all target hybridization intensities were scaled to 1500 arbitrary units using Microarray Suite 5.0 (Affymetrix). (Tze etal. Public Library of Science Biology, In Press 2005)
Raw data obtained from Affymetrix Suite 5.0 program with all arrays subjected to MG-U74A mask corrections and scaling to taget intensity of '1500'. Listed are all probe sets excluding masked probe sets and Affymetrix hybridization control probe sets.
Keywords = bone marrow B cells
 
Submission date Feb 01, 2005
Last update date May 27, 2005
Contact name Lina Tze
E-mail(s) Lina.Tze@anu.edu.au
Phone 011-61-2-6125-2031
Organization name John Curtin School of Medical Research
Street address
City Canberra
State/province ACT
ZIP/Postal code 2601
Country Australia
 
Platform ID GPL81
Series (1)
GSE2227 The role of basal immunoglobulin signaling in immature B cell development

Data table header descriptions
ID_REF ID of column
VALUE 'signal' a measure of the abundance of a transcript
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
100001_at 30.9 A 0.951005
100002_at 125.6 A 0.581931
100003_at 104.6 A 0.47938
100004_at 1320.1 P 0.000562
100005_at 2172.6 P 0.000562
100006_at 29.6 A 0.458816
100007_at 2841.1 P 0.000562
100009_r_at 21.2 A 0.732537
100010_at 296.4 A 0.189687
100011_at 477.6 P 0.004863
100012_at 17450 P 0.000219
100013_at 6523.4 P 0.000219
100014_at 2214.7 P 0.002617
100015_at 150.3 A 0.284747
100016_at 902.6 P 0.007543
100017_at 241.1 A 0.302547
100018_at 637.2 A 0.11716
100019_at 76.5 A 0.939581
100020_at 2056.7 P 0.003585
100021_at 137.9 A 0.561639

Total number of rows: 9977

Table truncated, full table size 257 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap