|
Status |
Public on Aug 03, 2020 |
Title |
76 Aged B |
Sample type |
SRA |
|
|
Source name |
Aged B_peripheral blood HSC
|
Organism |
Homo sapiens |
Characteristics |
subject id: Aged B Sex: Female race: Caucasian age: 70 tissue: peripheral blood cell type: Hematopoietic Stem Cells (HSCs)
|
Extracted molecule |
total RNA |
Extraction protocol |
Fluidigm C1 single cell platform RNA libraries were prepared for sequencing using standard Illumina protocols
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina NovaSeq 6000 |
|
|
Data processing |
Reads aligned to GrCh38 assembly of the human genome using STAR using default parameters Partek Genomics Suite was run to align reads to perform differenital expression analyses Genome_build: GrCh38 Supplementary_files_format_and_content: Abundance measurements
|
|
|
Submission date |
Oct 07, 2019 |
Last update date |
Aug 03, 2020 |
Contact name |
Michelle L Ratliff |
E-mail(s) |
ratliffm19@ecu.edu
|
Phone |
2527443127
|
Organization name |
East Carolina University
|
Department |
Microbiology and Immunology
|
Street address |
600 Moye Blvd, 132 Biotechnology Building
|
City |
Greenville |
State/province |
NC |
ZIP/Postal code |
27834 |
Country |
USA |
|
|
Platform ID |
GPL24676 |
Series (1) |
GSE138544 |
ARID3a expression in human hematopoietic stem cells is associated with distinct gene patterns in aged individuals |
|
Relations |
BioSample |
SAMN12991412 |
SRA |
SRX6962030 |