|
Status |
Public on Jul 07, 2020 |
Title |
PTID8_Enrollment_PBMC |
Sample type |
RNA |
|
|
Source name |
PBMC from PTID8 at Enrollment
|
Organism |
Homo sapiens |
Characteristics |
ptid: PTID8 visit: Enrollment tissue: PBMC rin: 9.4
|
Extracted molecule |
total RNA |
Extraction protocol |
Total RNA was extracted using the Qiagen RNeasy mini kit
|
Label |
Cy3
|
Label protocol |
Labeling was performed using 275 ng total RNA and the Life Technologies/Ambion Illumina TotalPrep RNA Amplification kit
|
|
|
Hybridization protocol |
standard as recommended by illumina
|
Scan protocol |
standard Illumina protocol using Illumina iScan system
|
Data processing |
The data was preprocessed by Bioconductor lumi package (version 2.34.0). It was vst transformed and rsn normalized. Only probes with detection threshold < 0.05 in at least 7 samples were included in the analysis.
|
|
|
Submission date |
Oct 30, 2019 |
Last update date |
Jul 07, 2020 |
Contact name |
Sean Hughes |
E-mail(s) |
smhughes@uw.edu
|
Organization name |
University of Washington
|
Street address |
850 Republican St
|
City |
Seattle |
State/province |
WA |
ZIP/Postal code |
98109 |
Country |
USA |
|
|
Platform ID |
GPL10558 |
Series (2) |
GSE139609 |
Effect of pre-exposure prophylaxis with tenofovir disoproxil fumarate and emtricitabine on gene expression in PBMC |
GSE139611 |
Effect of pre-exposure prophylaxis with tenofovir disoproxil fumarate and emtricitabine on gene expression |
|