|
| Status |
Public on Jun 23, 2020 |
| Title |
BloodSample40Chemo: 0Radiation: 1 |
| Sample type |
genomic |
| |
|
| Source name |
BloodSample40Chemo: 0Radiation: 1
|
| Organism |
Homo sapiens |
| Characteristics |
time point: 0
age: 47
chemotherapy any: 0
radiationtherapy any: 1
female: 1
batch number: 1
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Genomic DNA of whole blood samples
|
| Label |
Cy3, Cy5
|
| Label protocol |
Bisulfite conversion was performed on 500 ng of DNA using the llumina Infinium Methylation Assay protocol in the EZ DNA Methylation kit (Zymo Research). Next the samples were loaded onto the Infinium Human MethylationEPIC BeadChip
|
| |
|
| Hybridization protocol |
Illumina protocol
|
| Scan protocol |
Illumina protocol
|
| Description |
X201533610018_R08C01
|
| Data processing |
Noob normalization using preprocessNoob in the minfi R package
|
| |
|
| Submission date |
Nov 06, 2019 |
| Last update date |
Jun 23, 2020 |
| Contact name |
Mary Elizabeth Sehl |
| E-mail(s) |
msehl@mednet.ucla.edu
|
| Phone |
3108259203
|
| Organization name |
UCLA
|
| Department |
Medicine / Hematology-Oncology
|
| Street address |
100 UCLA Medical Plaza, Suite 550
|
| City |
Los Angeles |
| State/province |
CA |
| ZIP/Postal code |
90095 |
| Country |
USA |
| |
|
| Platform ID |
GPL23976 |
| Series (1) |
| GSE140038 |
The acute effects of chemotherapy and radiotherapy on peripheral blood epigenetic age in early stage breast cancer patients |
|
