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Sample GSM417269 Query DataSets for GSM417269
Status Public on Jun 01, 2010
Title Epididymis vs. Stromal-vascular fraction of adipose tissue 345547
Sample type RNA
 
Channel 1
Source name Stromal-vascular fraction
Organism Mus musculus
Characteristics tissue: Stromal-vascular fraction of adipose tissue
Extracted molecule total RNA
Extraction protocol Qiagen
Label Cy3
Label protocol Ambion
 
Channel 2
Source name epididymis
Organism Mus musculus
Characteristics tissue: epididymis
Extracted molecule total RNA
Extraction protocol Qiagen
Label Cy5
Label protocol Ambion
 
 
Hybridization protocol Agilent : 750.0 ng at 62 degree_C during 17 hours
Scan protocol Scanned on an GenePix 4000B fluorescent scanner. Image intensity data were extracted with GenePix Pro 6.0 analysis software.
Description Epididymis vs. Stromal-vascular fraction of adipose tissue
Date:2008/09/18
Data processing Interslide norm. : vsn, Intraslide norm. : none, Background norm. : none, Software used : rscript --> VALUE data obtained from log of processed Red signal/processed Green signal.
 
Submission date Jun 15, 2009
Last update date Jun 23, 2009
Contact name Kevin Lebrigand
Organization name IPMC/CNRS
Lab Functional Genomics Platform of Nice-Sophia-Antipolis, France.
Street address 660 route des lucioles
City Valbonne - Sophia-Antipolis
ZIP/Postal code 06560
Country France
 
Platform ID GPL1476
Series (1)
GSE16613 Comparison between stromal vascular fraction of adipose tissue, testis and epididymis in mouse

Data table header descriptions
ID_REF
VALUE VSN normalized log2(635/532)

Data table
ID_REF VALUE
24690 0.612511884309449
24666 -1.00077068428623
21331 -0.0704639571307908
24642 -0.220824719504262
21307 0.149887102533897
24618 -0.158666751572361
21283 0.141142239243126
24594 0.182704359319676
21259 0.193265074807027
24570 -4.15048007689314
21235 0.00965496631090446
24546 -0.461880342211357
21211 -0.00125298790486195
24522 -0.609209504858256
21187 -1.24727222567639
21163 1.29545006376275
21139 -0.684127819056016
13398 -1.40936013902459
13374 -0.092395542601622
13350 -2.03858447204915

Total number of rows: 25344

Table truncated, full table size 585 Kbytes.




Supplementary file Size Download File type/resource
GSM417269.gpr.gz 2.3 Mb (ftp)(http) GPR
Processed data included within Sample table

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