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Sample GSM42 Query DataSets for GSM42
Status Public on Jan 24, 2001
Title NHGRI_UACC-457
Sample type RNA
 
Channel 1
Source name melanoma
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name NHGRI_Melanoma_Ref
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Biopsy location: unknown
Patient sex: female
Patient age: unknown
Passage number: 19
p16 mutation status: WT
Invasive ability: 3.1 +/- 0.2%
Vasculogenic mimicry: -
Gel contraction: ND
Cell motility: 12.80 +/- 0.05
Scratch wound (%): ND

See http://www.nhgri.nih.gov/DIR/Microarray/Nature_paper.pdf
and http://www.nhgri.nih.gov/DIR/Microarray/Melanoma_Supplement/index.html
 
Submission date Jan 08, 2001
Last update date May 27, 2005
Contact name Michael Bittner
E-mail(s) mbittner@nhgri.nih.gov
Phone 301-496-7980
Fax 301-402-3241
URL http://www.nhgri.nih.gov/Intramural_research/People/bittnerm.html
Organization name NHGRI, NIH
Department Cancer Genetics Branch
Street address
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL7
Series (1)
GSE1 NHGRI_Melanoma_class

Data table header descriptions
ID_REF
CH1_TARGET_TOP Sample 1 (Red Channel) target location in image - top
CH1_TARGET_LT Sample 1 (Red Channel) target location in image - left
CH1_TARGET_BOT Sample 1 (Red Channel) target location in image - bottom
CH1_TARGET_RT Sample 1 (Red Channel) target location in image - right
CH1_RAW Sample 1 (Red Channel) Total Intensity
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_AREA Sample 1 (Red Channel) Area
CH1_BKD_MEAN Sample 1 (Red Channel) Mean Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_TARGET_TOP Sample 2 (Green Channel) target location in image - top
CH2_TARGET_LT Sample 2 Green Channel) target location in image - left
CH2_TARGET_BOT Sample 2 Green Channel) target location in image - bottom
CH2_TARGET_RT Sample 2 Green Channel) target location in image - right
CH2_RAW Sample 2 Green Channel) Total Intensity
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH2_SD Sample 2 Green Channel) Standard Deviation
CH2_AREA Sample 2 Green Channel) Area
CH2_BKD_MEAN Sample 2 Green Channel) Mean Background Level
CH2_BKD_SD Sample 2 Green Channel) Background Standard Deviation
UNION_AREA Union Area
RATIO Raw Ratio
VALUE log ratio of PRE_VALUE
CONF_LEVEL Confidence Level - fixed at 99%
CONF_LOW Confidence Interval - Lower Bound - Raw Ratio
CONF_UP Confidence Interval - Upper Bound - Raw Ratio
NORM_FACTOR M-value
CV Coefficient of variance
PRE_VALUE Calibrated Ratio

Data table
ID_REF CH1_TARGET_TOP CH1_TARGET_LT CH1_TARGET_BOT CH1_TARGET_RT CH1_RAW CH1_MEAN CH1_SD CH1_AREA CH1_BKD_MEAN CH1_BKD_SD CH2_TARGET_TOP CH2_TARGET_LT CH2_TARGET_BOT CH2_TARGET_RT CH2_RAW CH1_MEAN CH2_SD CH2_AREA CH2_BKD_MEAN CH2_BKD_SD UNION_AREA RATIO VALUE CONF_LEVEL CONF_LOW CONF_UP NORM_FACTOR CV PRE_VALUE
1 77 146 95 164 4243739 27644.6 11618.8 154 1422.1 284.3 77 146 95 164 3852449 22577.9 9826.4 143 3808.8 261.9 154 1.224 -0.0491493 99.000 0.548 3.432 1.372 0.216 0.893
2 682 154 700 172 229188 1790.8 535.8 84 1147.6 264.3 682 154 700 172 391652 1409.2 665.7 58 3612.0 345.8 86 1.271 -0.0333893 99.000 0.548 3.432 1.372 0.216 0.926
3 113 146 131 164 41939 1085.7 252.7 19 1381.3 266.9 113 146 131 164 82528 1109.4 281.2 17 3745.2 261.5 25 0.979 -0.1469103 99.000 0.548 3.432 1.372 0.216 0.713
4 718 154 736 172 250258 1638.8 573.4 90 1141.9 261.6 718 154 736 172 456902 1572.9 646.1 91 3503.8 246.1 98 1.042 -0.1197583 99.000 0.548 3.432 1.372 0.216 0.759
5 150 146 168 164 2675549 17614.9 8856.7 149 1360.7 268.9 150 146 168 164 1291298 5434.7 3077.7 108 3723.5 261.5 149 3.241 0.3734643 99.000 0.548 3.432 1.372 0.216 2.363
6 754 154 772 172 5391046 44955.1 18763.3 124 1122.2 265.0 754 154 772 172 5652649 44805.9 20122.1 113 3507.4 247.9 125 1.003 -0.1360833 99.000 0.548 3.432 1.372 0.216 0.731
7 186 146 204 164 1045656 7507.2 2228.3 124 1354.3 268.2 186 146 204 164 1002215 4765.0 1602.3 115 3728.3 263.4 126 1.575 0.0599423 99.000 0.548 3.432 1.372 0.216 1.148
8 790 154 808 172 2172226 18349.9 6651.8 120 1045.0 235.1 790 154 808 172 1760749 12214.8 4767.4 105 3506.2 247.9 120 1.502 0.0394143 99.000 0.548 3.432 1.372 0.216 1.095
9 223 146 241 164 2215337 13898.2 5196.3 153 1380.0 309.9 223 146 241 164 2198375 11292.3 6952.1 112 3868.9 397.2 153 1.231 -0.0472083 99.000 0.548 3.432 1.372 0.216 0.897
10 827 154 845 172 208066 1457.6 686.3 87 1019.4 231.0 827 154 845 172 436225 1693.4 916.3 80 3499.8 243.2 92 0.861 -0.2027323 99.000 0.548 3.432 1.372 0.216 0.627
11 259 146 277 164 1191284 9031.2 3477.5 121 1327.8 289.7 259 146 277 164 2164891 15002.2 6556.6 106 3822.9 387.0 123 0.602 -0.3575353 99.000 0.548 3.432 1.372 0.216 0.439
12 863 155 881 173 62806 1374.1 530.9 29 1041.5 250.0 863 155 881 173 128959 1472.2 686.9 28 3487.7 233.4 34 0.933 -0.1674913 99.000 0.548 3.432 1.372 0.216 0.680
13 71 760 89 778 937761 8588.3 3801.3 96 1604.8 288.6 71 760 89 778 1058664 7501.9 3465.9 95 4005.3 267.6 100 1.145 -0.0783143 99.000 0.548 3.432 1.372 0.216 0.835
14 685 758 703 776 3484631 31592.8 19178.3 114 1281.1 279.5 685 758 703 776 3632979 30611.7 18574.6 102 3661.7 269.5 114 1.032 -0.1237823 99.000 0.548 3.432 1.372 0.216 0.752
15 107 760 125 778 1328168 12524.6 4654.2 100 1604.9 294.8 107 760 125 778 1920590 16514.9 6231.4 98 3916.9 279.9 102 0.758 -0.2572753 99.000 0.548 3.432 1.372 0.216 0.553
16 721 758 739 776 1157315 11184.4 4200.5 100 1259.9 288.9 721 758 739 776 879096 5806.4 1965.4 98 3646.2 281.0 101 1.926 0.1473673 99.000 0.548 3.432 1.372 0.216 1.404
17 144 760 162 778 1050853 12435.8 5218.6 80 1575.6 283.6 144 760 162 778 652232 4862.6 2231.6 75 3833.8 270.5 83 2.557 0.2704463 99.000 0.548 3.432 1.372 0.216 1.864
18 758 758 776 776 612183 5040.9 2032.2 100 1205.9 275.5 758 758 776 776 1054591 7158.8 2998.9 101 3602.4 277.0 106 0.704 -0.2898833 99.000 0.548 3.432 1.372 0.216 0.513
19 180 760 198 778 803194 6720.4 2934.8 100 1559.9 293.9 180 760 198 778 842335 4847.9 2271.2 101 3835.9 289.6 105 1.386 0.0047513 99.000 0.548 3.432 1.372 0.216 1.011
20 795 758 813 776 924349 7554.9 2273.6 112 1165.3 266.6 795 758 813 776 851840 4486.9 1580.2 105 3549.3 277.8 114 1.684 0.0888453 99.000 0.548 3.432 1.372 0.216 1.227

Total number of rows: 8192

Table truncated, full table size 1313 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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