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Sample GSM42007 Query DataSets for GSM42007
Status Public on Apr 18, 2005
Title heart of mouse, 2 week control (1A)
Sample type RNA
 
Channel 1
Source name heart of 2 week control male mouse
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name heart of 2 week control female mouse
Organism Mus musculus
Extracted molecule total RNA
 
 
Description RNA samples (60ug) were extracted from the mouse heart and retrotranscribed to cDNA labeled with Cy5 (male) and Cy3 (female) individually. The cDNAs were co-hybridized with the 27K mouse microarray slide.
 
Submission date Feb 12, 2005
Last update date May 27, 2005
Contact name Dan Zhou
E-mail(s) d2zhou@ucsd.edu
Phone 858-822-6889
Fax 858-534-6971
Organization name University of California, San Diego, School of Medicine
Department Pediatrics
Lab Haddad Lab
Street address CMG 103, 9500 Gilman Drive, MC0735
City La Jolla
State/province CA
ZIP/Postal code 92093-0735
Country USA
 
Platform ID GPL1862
Series (1)
GSE2271 Gene expression and phenotypic characterization of mouse heart after chronic constant or intermittent hypoxia

Data table header descriptions
ID_REF
X X-coordinate of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
Y Y-coordinate of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
Dia. diameter in µm of the feature-indicator.
F635 Median median feature pixel intensity for Cy5 channel.
F635 Mean mean feature pixel intensity for Cy5 channel.
F635 SD standard deviation of feature pixel intensity for Cy5 channel.
B635 Median median background pixel intensity for Cy5 channel.
B635 Mean mean background pixel intensity for Cy5 channel.
B635 SD standard deviation of background pixel intensity for Cy5 channel.
F532 Median median feature pixel intensity for Cy3 channel.
F532 Mean mean feature pixel intensity for Cy3 channel.
F532 SD standard deviation of feature pixel intensity for Cy3 channel.
B532 Median median background pixel intensity for Cy3 channel.
B532 Mean mean background pixel intensity for Cy3 channel.
B532 SD standard deviation of background pixel intensity for Cy3 channel.
F Pixels number of feature pixels.
B Pixels number of background pixels.
Flag substandard features have negative values.
VALUE log2 ratio of normalized net signals in 635nm and 532nm channels.

Data table
ID_REF X Y Dia. F635 Median F635 Mean F635 SD B635 Median B635 Mean B635 SD F532 Median F532 Mean F532 SD B532 Median B532 Mean B532 SD F Pixels B Pixels Flag VALUE
1 2255 7680 95 460 476 134 119 122 36 588 607 148 255 257 45 256 2063 0 -0.207517946
2 2420 7605 85 810 788 296 119 123 38 972 952 295 256 260 49 208 1660 0 -0.293041385
3 2595 7720 75 183 187 70 120 123 38 335 344 83 255 259 49 156 1261 -100
4 2750 7605 90 296 307 100 120 123 37 396 400 87 258 260 45 256 1880 0 0.109139654
5 2920 7715 90 3181 3136 948 124 130 46 3617 3560 907 268 273 60 256 1887 0 -0.373381332
6 3080 7635 55 159 161 48 123 124 36 296 310 79 272 275 49 80 656 -100
7 3240 7710 90 10235 9930 2945 128 142 83 9903 9413 2968 264 283 115 256 1903 0 -0.17336806
8 3425 7600 105 227 238 95 120 124 37 374 389 150 263 265 47 316 2294 -100
9 3575 7685 70 187 191 64 122 128 39 299 309 73 274 278 52 156 1140 -100
10 3735 7625 80 192 201 73 122 125 37 337 349 78 266 269 45 208 1500 -100
11 3885 7700 90 289 292 94 124 130 49 390 405 95 266 274 61 256 1882 -100
12 4065 7605 100 269 283 104 123 127 38 368 388 106 267 270 47 316 2320 -100
13 4220 7695 80 199 218 87 126 130 41 364 408 185 273 277 71 208 1511 -100
14 4385 7595 100 30582 27813 8743 136 152 97 25514 23437 7347 275 285 75 316 2265 0 0.028830441
15 4550 7695 110 169 177 67 133 147 94 325 330 73 276 284 67 392 2290 -50
16 4720 7605 100 10432 10103 2161 133 142 72 9806 9446 1829 276 287 90 316 2254 0 -0.129811364
17 4885 7710 95 2299 3088 2567 142 169 136 2195 3099 2490 286 312 152 256 1965 0 -0.065558434
18 5050 7615 125 65535 47316 26868 146 173 106 65535 45373 27608 282 302 102 460 2341 -100
19 5205 7710 95 4023 3789 1196 136 153 80 3499 3401 1018 283 294 80 256 1901 0 0.031622193
20 5365 7610 85 2756 2778 516 135 181 290 2425 2434 400 280 320 240 208 1652 0 0.047372198

Total number of rows: 28704

Table truncated, full table size 2486 Kbytes.




Supplementary data files not provided
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