|
| Status |
Public on Dec 31, 2022 |
| Title |
EF_Lymphoma_2 [6_30242_GTGAAA] |
| Sample type |
SRA |
| |
|
| Source name |
Lymphoma derived from hMSLCs expressing EWSFLI1
|
| Organism |
Homo sapiens |
| Characteristics |
host strain: NOD/SCID mice
cell type source: human Mesenchymal Stem Like Cells (hMSLCs) expressing EWSFLI1
tissue: Lymphoma
treatment: EWSRndFLI
|
| Growth protocol |
Human Mesenchymal Stem Like Cells injected into the gastrocnemius muscles of NOD/SCID mice
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was extracted following Sigma-Aldrich protocol
TruSeq stranded mRNA (Illumina)
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2500 |
| |
|
| Data processing |
Alignment was made using STAR version 2.6.1b
The table of counts was obtained with FeatureCounts function in the package subread, version 1.5
Genome_build: hg38
Supplementary_files_format_and_content: counts
|
| |
|
| Submission date |
Dec 12, 2019 |
| Last update date |
Oct 19, 2023 |
| Contact name |
Júlia Perera-Bel |
| E-mail(s) |
mardata-bu@researchmar.net
|
| Organization name |
Hospital del Mar Research Institute
|
| Department |
MARData-BU
|
| Street address |
Doctor Aiguader, 88
|
| City |
Barcelona |
| ZIP/Postal code |
08003 |
| Country |
Spain |
| |
|
| Platform ID |
GPL16791 |
| Series (2) |
| GSE141888 |
Modeling the initiation of Ewing sarcoma tumorigenesis in human Embryonic Stem Cells [RNA-seq] |
| GSE141889 |
Modeling the initiation of Ewing sarcoma tumorigenesis in human Embryonic Stem Cells |
|
| Relations |
| BioSample |
SAMN13546114 |
| SRA |
SRX7353818 |
