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| Status |
Public on Mar 01, 2020 |
| Title |
ko retina |
| Sample type |
SRA |
| |
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| Source name |
developing retinal cells
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| Organism |
Gallus gallus |
| Characteristics |
tissue: retina
developmental stage: E5+48h
florescent tag: OTX2ECR2::GFP reporter
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| Extracted molecule |
total RNA |
| Extraction protocol |
not provided
10x Chromium based
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| |
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2500 |
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| Data processing |
Cell Ranger - demultiplexing, barecode processing, single cell 3' gene counting
BAM files for wt and ko samples
Genome_build: GRCg6a (Gallus gallus6)
Supplementary_files_format_and_content: filtered matrices, barecodes and gene lists for both samples
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| Submission date |
Dec 18, 2019 |
| Last update date |
Mar 02, 2020 |
| Contact name |
Miruna Georgiana Ghinia Tegla |
| E-mail(s) |
mghinia@ccny.cuny.edu
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| Organization name |
CCNY CUNY
|
| Department |
Biology
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| Lab |
Emerson Lab
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| Street address |
85 St. Nicholas Terrace
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| City |
New York |
| State/province |
New York |
| ZIP/Postal code |
10031 |
| Country |
USA |
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| Platform ID |
GPL19005 |
| Series (1) |
| GSE142244 |
OTX2 represses sister cell fate choices in the developing retina to promote photoreceptor specification |
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| Relations |
| BioSample |
SAMN13620232 |
| SRA |
SRX7405865 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM4223662_ko_barcodes.tsv.gz |
20.2 Kb |
(ftp)(http) |
TSV |
| GSM4223662_ko_genes.tsv.gz |
167.9 Kb |
(ftp)(http) |
TSV |
| GSM4223662_ko_matrix.mtx.gz |
18.6 Mb |
(ftp)(http) |
MTX |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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