|
Status |
Public on Aug 23, 2022 |
Title |
LAL-0015-B (MethylationEPIC) |
Sample type |
genomic |
|
|
Source name |
Saliva
|
Organism |
Homo sapiens |
Characteristics |
look-alike couple: LAL-10 tissue: Normal human saliva sample
|
Extracted molecule |
genomic DNA |
Extraction protocol |
Total DNA was isolated by standard procedures
|
Label |
Cy5 and Cy3
|
Label protocol |
Standard Illumina labelling protocol
|
|
|
Hybridization protocol |
Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium MethylationEPIC Beadchip using standard Illumina protocol
|
Scan protocol |
Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
|
Data processing |
Minfi R package standard protocol Minfi preprocessNoob (single-sample) normalized Average Beta
|
|
|
Submission date |
Dec 18, 2019 |
Last update date |
Aug 23, 2022 |
Contact name |
Manel Esteller |
E-mail(s) |
pebc.share@gmail.com
|
Organization name |
Josep Carreras Leukaemia Research Institute (IJC)
|
Department |
Cancer and Leukemia Epigenetics and Biology Program (PEBCL)
|
Lab |
Cancer Epigenetics
|
Street address |
Ctra. de Can Ruti, Cami de les Escoles s/n
|
City |
Badalona |
State/province |
Barcelona |
ZIP/Postal code |
08916 |
Country |
Spain |
|
|
Platform ID |
GPL21145 |
Series (2) |
GSE142302 |
Epigenetic profiling of 16 look-alike human couples |
GSE142304 |
Whole genome SNP array and epigenetic profiling of 16 look-alike human couples |
|