|
| Status |
Public on Aug 23, 2022 |
| Title |
LAL-0020-B (MethylationEPIC) |
| Sample type |
genomic |
| |
|
| Source name |
Saliva
|
| Organism |
Homo sapiens |
| Characteristics |
look-alike couple: LAL-13
tissue: Normal human saliva sample
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Total DNA was isolated by standard procedures
|
| Label |
Cy5 and Cy3
|
| Label protocol |
Standard Illumina labelling protocol
|
| |
|
| Hybridization protocol |
Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium MethylationEPIC Beadchip using standard Illumina protocol
|
| Scan protocol |
Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
|
| Data processing |
Minfi R package standard protocol
Minfi preprocessNoob (single-sample) normalized Average Beta
|
| |
|
| Submission date |
Dec 18, 2019 |
| Last update date |
Aug 23, 2022 |
| Contact name |
Manel Esteller |
| E-mail(s) |
pebc.share@gmail.com
|
| Organization name |
Josep Carreras Leukaemia Research Institute (IJC)
|
| Department |
Cancer and Leukemia Epigenetics and Biology Program (PEBCL)
|
| Lab |
Cancer Epigenetics
|
| Street address |
Ctra. de Can Ruti, Cami de les Escoles s/n
|
| City |
Badalona |
| State/province |
Barcelona |
| ZIP/Postal code |
08916 |
| Country |
Spain |
| |
|
| Platform ID |
GPL21145 |
| Series (2) |
| GSE142302 |
Epigenetic profiling of 16 look-alike human couples |
| GSE142304 |
Whole genome SNP array and epigenetic profiling of 16 look-alike human couples |
|
