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Sample GSM42299

Query DataSets for GSM42299

Status

Public on Jul 20, 2005

Title

CGEN 15.5dpc GFP+Tree Vs Rest_Filtered column 13

Sample type

RNA

Channel 1

Source name

GFP+ cells from 15.5dpc HoxB7-GFP kidneys

Organism

Extracted molecule

total RNA

Channel 2

Source name

GFP- cells from 15.5dpc HoxB7-GFP kidneys

Organism

Extracted molecule

total RNA

Description

Sample; 3
File Name; CGEN 15.5dpc GFP+Tree Vs rest_Filtered GFP+Tree Vs
Array Design; 1
Age; 15.5
Array Design; Mouse Compugen 22K oligo
Author; Sean Grimmond
Common Reference (Yes/No, ID); none
Concentration; 100
Data processing/normalization; Lowess Normalisation
Developmental Stage; embryonic
Diseased/Normal; normal
Experiment Type; Pairwise comparison
Genetic Characteristic; HoxB7-GFP transgenic
Image Analysis Software; Imagene5.5
Labeling Protocol; Amino Allyl Message AMp Amibon
Organ/Organism part; kidney
Organism; Mus musculus
Organization; IMB, UQ
RNA type; aRNA
Sample Source; primary tissue
Sampling Method; FACS sorting of GFP +ve and -ve Cell populations
Sex; pool of both
Dye Swap; none
A Lowess curve was fit to the log-intensity versus log-ratio plot. 20.0% of the data was used to calculate the Lowess fit at each point. This curve was used to adjust the control value for each measurement. If the control channel was lower than 10 then 10 was used instead.
CGEN 15.5dpc GFP+Tree Vs rest_Filtered GFP+Tree Vs rest transf..base column 13

Submission date

Feb 16, 2005

Last update date

Jul 20, 2005

Contact name

Darrin F Taylor

E-mail(s)

d.taylor@imb.uq.edu.au

Phone

+61 7 3346 2607

Organization name

Institute for Molecular Bioscience, Uni of Qld

Department

Genomics and Bioinformatics

Lab

Expression Genomics Lab

Street address

Research Rd

City

St Lucia

State/province

Qld

ZIP/Postal code

4072

Country

Australia

Platform ID

Series (1)

15.5dpc Ureteric tree cells Vs rest

Data table header descriptions
ID_REF	ID_REF
Raw Value	Type: float; Scale: linear_scale
Control Value	Type: float; Scale: linear_scale
VALUE	log ratio (log2 of PRE_VALUE)
Flags	Type: AbsoluteCallTypeEnum; Scale: unscaled
PRE_VALUE	Normalized Value Type: float; Scale: log_base_e

Data table
ID_REF	Raw Value	Control Value	VALUE	Flags	PRE_VALUE
CS:02:CGEN_MOUSE_3000002_1	2.102	2.004	0.0690153	Present	1.049
CS:03:CGEN_MOUSE_3000003_1	Undef	Undef		Undef
CS:04:CGEN_MOUSE_3000004_1	530.4	517.5	0.0356243	Present	1.025
CS:05:CGEN_MOUSE_3000005_1	Undef	Undef		Undef
CS:06:CGEN_MOUSE_3000006_1	5.250	7.590	-0.5311563	Present	0.692
CS:07:CGEN_MOUSE_3000007_1	Undef	Undef		Undef
CS:08:CGEN_MOUSE_3000008_1	1.204	1.325	-0.1376483	Present	0.909
CS:09:CGEN_MOUSE_3000009_1	Undef	Undef		Undef
CS:10:CGEN_MOUSE_3000010_1	506.1	490	0.0468403	Present	1.033
CS:11:CGEN_MOUSE_3000011_1	1.771	1.464	0.2750073	Present	1.21
CS:12:CGEN_MOUSE_3000012_1	1.589	1.821	-0.1959463	Present	0.873
CS:13:CGEN_MOUSE_3000013_1	9.013	7.408	0.2833293	Present	1.217
CS:14:CGEN_MOUSE_3000014_1	40.330	30.059	0.4243853	Present	1.342
CS:15:CGEN_MOUSE_3000015_1	17.889	17.194	0.0565843	Present	1.04
CS:16:CGEN_MOUSE_3000016_1	925.2	621.2	0.5743443	Present	1.489
CS:17:CGEN_MOUSE_3000017_1	1.325	1.382	-0.0603973	Present	0.959
CS:18:CGEN_MOUSE_3000018_1	2.105	2.819	-0.4208203	Present	0.747
CS:19:CGEN_MOUSE_3000019_1	1.769	1.779	-0.0086823	Present	0.994
CS:20:CGEN_MOUSE_3000020_1	Undef	Undef		Undef
CS:21:CGEN_MOUSE_3000021_1	Undef	Undef		Undef

Total number of rows: 22702

Table truncated, full table size 1249 Kbytes.

Supplementary data files not provided

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