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Sample GSM423 Query DataSets for GSM423
Status Public on Jul 20, 2001
Title circadian rhythm time at 18,0 biological
Sample type RNA
 
Channel 1
Source name time at 18 hours
Organism Arabidopsis thaliana
Extracted molecule total RNA
 
Channel 2
Source name time at 0 hours
Organism Arabidopsis thaliana
Extracted molecule total RNA
 
 
Description Category: Development
Subcategory: Rhythm
Scanning Software: ScanAlyze
Software version: 2.42
Scanning parameters:
Keywords = circadian rhythm
Lot batch = R21
 
Submission date Jul 20, 2001
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL13
Series (1)
GSE4 Diurnal and Circadian-Regulated Genes in Arabidopsis

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOP BOT LEFT RIGHT UNF_VALUE
1 1110 856 3981 4424 3559 1297 865 1201 4943 6144 0 0 .312 .856 76 75 1.119 .805 .894 1.242 0 1351 175 189 54 68 .312
2 1154 825 588 1298 446 1280 852 1183 619 1802 .41 0 .074 .714 56 50 1.318 .95 .759 1.053 .331 1281 175 189 75 89 .074
3 901 699 430 1237 465 980 772 1072 646 1718 .269 0 .587 .909 51 46 .925 .666 1.081 1.502 .319 1281 175 189 97 111 .587
4 829 711 356 1416 693 928 723 1004 962 1966 .941 0 1.434 1.174 32 30 .514 .37 1.947 2.702 2.455 1261 175 189 118 132 1.434
5 772 694 768 1294 656 770 638 886 911 1797 .306 0 .246 .774 60 59 1.171 .843 .854 1.186 .425 1281 175 189 139 153 .246
6 776 698 451 1111 446 835 665 923 620 1543 .238 0 .459 .869 47 50 1.011 .727 .989 1.375 .259 1255 176 190 161 175 .459
7 835 712 1110 1488 774 954 714 991 1075 2066 .783 0 -.046 .704 68 64 1.434 1.033 .697 .968 .699 1234 176 190 182 196 -.046
8 799 718 601 1213 517 875 696 966 718 1684 .314 0 .257 .852 57 50 1.162 .837 .86 1.195 .448 1255 176 190 203 217 .257
9 739 680 273 905 282 776 623 865 391 1256 .257 0 .518 .955 36 37 .968 .698 1.033 1.432 .297 1255 176 190 225 239 .518
10 764 631 420 1293 677 813 616 855 940 1795 .758 0 1.162 1.253 45 56 .62 .447 1.612 2.238 1.754 1234 176 190 246 260 1.162
11 693 597 308 1094 455 764 639 887 632 1519 .517 0 1.037 1.089 46 45 .677 .487 1.477 2.052 .76 1255 176 190 267 281 1.037
12 656 572 845 1484 867 705 617 856 1205 2061 .681 0 .512 1.075 69 63 .975 .701 1.026 1.426 .784 1255 176 190 289 303 .512
13 647 560 558 1263 696 706 567 787 967 1754 .554 0 .793 1.053 62 67 .802 .577 1.247 1.733 .586 1234 176 190 310 324 .793
14 618 530 474 915 370 689 545 756 514 1270 .288 0 .117 .977 56 55 1.281 .922 .781 1.084 .231 1261 176 190 331 345 .117
15 628 542 615 1055 500 675 555 770 695 1465 .14 0 .176 1.027 53 58 1.23 .885 .813 1.13 .042 1276 176 190 353 367 .176
16 737 611 409 1250 698 683 552 766 970 1736 .751 0 1.246 1.383 49 56 .586 .422 1.707 2.372 2.767 1261 176 190 374 388 1.246
17 1021 825 1308 1547 968 710 579 804 1344 2148 .702 0 .039 .741 73 75 1.351 .973 .74 1.028 .519 1281 176 190 395 409 .039
18 1275 919 2669 2996 2381 879 615 854 3307 4161 .762 0 .309 .83 87 85 1.121 .807 .892 1.239 .752 1281 176 190 417 431 .309
19 1082 708 775 1507 849 921 658 913 1180 2093 .393 0 .607 .925 68 70 .913 .657 1.095 1.523 .444 1261 176 190 438 452 .607
20 792 659 945 1562 838 828 724 1005 1164 2169 .624 0 .301 .922 75 67 1.128 .812 .887 1.232 .662 1351 177 191 459 473 .301

Total number of rows: 12800

Table truncated, full table size 1572 Kbytes.




Supplementary data files not provided
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