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Sample GSM424850 Query DataSets for GSM424850
Status Public on Apr 18, 2011
Title COPD4
Sample type RNA
 
Source name alveolar macrophage
Organism Homo sapiens
Characteristics cell type: alveolar macrophage
disease status: COPD patient
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy Kit according to manufacturer's protocol
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description alveolar macrophages isolated from bronchoalveolar lavage fluid
Data processing GeneSpring 7.3 GC-RMA algorithm
 
Submission date Jul 07, 2009
Last update date Sep 01, 2016
Contact name Szilard Poliska
E-mail(s) poliska@dote.hu
Phone +3652416432
Organization name University of Debrecen
Department Biochemistry and Molecular Biology
Lab Nuclear Hormone Receptor Research Laboratory
Street address Egyetem ter 1.
City Debrecen
ZIP/Postal code H-4012
Country Hungary
 
Platform ID GPL96
Series (1)
GSE16972 COPD-Specific Gene Expression Signatures of Alveolar Macrophages as well as Peripheral Blood Monocytes Overlap and Correlate with Lung Function
Relations
Reanalyzed by GSE86363

Data table header descriptions
ID_REF
VALUE GC-RMA (GeneSpring 7.3) normalized signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 247.776 P 0.026111
AFFX-BioB-M_at 423.44 P 0.000972149
AFFX-BioB-3_at 226.596 P 0.0103167
AFFX-BioC-5_at 609.711 P 0.000296708
AFFX-BioC-3_at 431.007 P 0.00255552
AFFX-BioDn-5_at 590.11 P 0.00179591
AFFX-BioDn-3_at 3912.36 P 0.000753643
AFFX-CreX-5_at 5621.89 P 4.42873e-05
AFFX-CreX-3_at 8323.69 P 4.42873e-05
AFFX-DapX-5_at 28.1697 A 0.287743
AFFX-DapX-M_at 52.7987 A 0.147939
AFFX-DapX-3_at 8.86159 A 0.749204
AFFX-LysX-5_at 5.19109 A 0.60308
AFFX-LysX-M_at 21.1322 A 0.574038
AFFX-LysX-3_at 20.1654 A 0.39692
AFFX-PheX-5_at 6.26585 A 0.868639
AFFX-PheX-M_at 5.58159 A 0.883887
AFFX-PheX-3_at 52.2704 A 0.52976
AFFX-ThrX-5_at 9.00376 A 0.9273
AFFX-ThrX-M_at 12.2701 A 0.48511

Total number of rows: 22283

Table truncated, full table size 669 Kbytes.




Supplementary file Size Download File type/resource
GSM424850.CEL.gz 3.5 Mb (ftp)(http) CEL
GSM424850.CHP.gz 119.6 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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