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Sample GSM424858 Query DataSets for GSM424858
Status Public on Apr 18, 2011
Title control8
Sample type RNA
 
Source name alveolar macrophage
Organism Homo sapiens
Characteristics cell type: alveolar macrophage
disease status: control patient
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy Kit according to manufacturer's protocol
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description alveolar macrophages isolated from bronchoalveolar lavage fluid
Data processing GeneSpring 7.3 GC-RMA algorithm
 
Submission date Jul 07, 2009
Last update date Sep 01, 2016
Contact name Szilard Poliska
E-mail(s) poliska@dote.hu
Phone +3652416432
Organization name University of Debrecen
Department Biochemistry and Molecular Biology
Lab Nuclear Hormone Receptor Research Laboratory
Street address Egyetem ter 1.
City Debrecen
ZIP/Postal code H-4012
Country Hungary
 
Platform ID GPL96
Series (1)
GSE16972 COPD-Specific Gene Expression Signatures of Alveolar Macrophages as well as Peripheral Blood Monocytes Overlap and Correlate with Lung Function
Relations
Reanalyzed by GSE86363

Data table header descriptions
ID_REF
VALUE GC-RMA (GeneSpring 7.3) normalized signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 278.596 P 0.036569
AFFX-BioB-M_at 290.603 P 0.00159257
AFFX-BioB-3_at 171.329 P 0.0464816
AFFX-BioC-5_at 711.63 P 0.000224668
AFFX-BioC-3_at 575.867 P 0.00179591
AFFX-BioDn-5_at 569.505 P 0.000509415
AFFX-BioDn-3_at 5017.47 P 0.000445901
AFFX-CreX-5_at 7171.04 P 4.42873e-05
AFFX-CreX-3_at 13082.3 P 4.42873e-05
AFFX-DapX-5_at 40.2074 A 0.216524
AFFX-DapX-M_at 69.5363 A 0.102165
AFFX-DapX-3_at 8.35802 A 0.966323
AFFX-LysX-5_at 28.2987 A 0.368438
AFFX-LysX-M_at 65.6191 A 0.313723
AFFX-LysX-3_at 27.5013 A 0.340661
AFFX-PheX-5_at 7.80286 A 0.876428
AFFX-PheX-M_at 6.4404 A 0.883887
AFFX-PheX-3_at 40.9492 A 0.617401
AFFX-ThrX-5_at 5.97732 A 0.963431
AFFX-ThrX-M_at 15.8321 A 0.58862

Total number of rows: 22283

Table truncated, full table size 666 Kbytes.




Supplementary file Size Download File type/resource
GSM424858.CEL.gz 3.5 Mb (ftp)(http) CEL
GSM424858.CHP.gz 119.7 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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