NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM424860 Query DataSets for GSM424860
Status Public on Apr 18, 2011
Title COPD8
Sample type RNA
 
Source name alveolar macrophage
Organism Homo sapiens
Characteristics cell type: alveolar macrophage
disease status: COPD patient
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy Kit according to manufacturer's protocol
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description alveolar macrophages isolated from bronchoalveolar lavage fluid
Data processing GeneSpring 7.3 GC-RMA algorithm
 
Submission date Jul 07, 2009
Last update date Sep 01, 2016
Contact name Szilard Poliska
E-mail(s) poliska@dote.hu
Phone +3652416432
Organization name University of Debrecen
Department Biochemistry and Molecular Biology
Lab Nuclear Hormone Receptor Research Laboratory
Street address Egyetem ter 1.
City Debrecen
ZIP/Postal code H-4012
Country Hungary
 
Platform ID GPL96
Series (1)
GSE16972 COPD-Specific Gene Expression Signatures of Alveolar Macrophages as well as Peripheral Blood Monocytes Overlap and Correlate with Lung Function
Relations
Reanalyzed by GSE86363

Data table header descriptions
ID_REF
VALUE GC-RMA (GeneSpring 7.3) normalized signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 352.57 P 0.0182806
AFFX-BioB-M_at 297.313 P 0.000445901
AFFX-BioB-3_at 281.221 P 0.00844047
AFFX-BioC-5_at 743.823 P 0.000195116
AFFX-BioC-3_at 631.902 P 0.000445901
AFFX-BioDn-5_at 673.885 P 0.000509415
AFFX-BioDn-3_at 5041.53 P 0.000258358
AFFX-CreX-5_at 9862.3 P 4.42873e-05
AFFX-CreX-3_at 15842.8 P 4.42873e-05
AFFX-DapX-5_at 18.228 A 0.250796
AFFX-DapX-M_at 43.2618 A 0.131361
AFFX-DapX-3_at 3.97574 A 0.910522
AFFX-LysX-5_at 38.1039 A 0.300606
AFFX-LysX-M_at 47.8873 A 0.455413
AFFX-LysX-3_at 34.5858 A 0.205732
AFFX-PheX-5_at 7.69659 A 0.891021
AFFX-PheX-M_at 4.56028 A 0.834139
AFFX-PheX-3_at 89.4818 A 0.41138
AFFX-ThrX-5_at 11.42 A 0.904333
AFFX-ThrX-M_at 7.79558 A 0.672921

Total number of rows: 22283

Table truncated, full table size 667 Kbytes.




Supplementary file Size Download File type/resource
GSM424860.CEL.gz 3.5 Mb (ftp)(http) CEL
GSM424860.CHP.gz 120.0 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap