|
Status |
Public on Jan 04, 2020 |
Title |
nSyb_48h_ORN (N509Barcode_702-502) |
Sample type |
SRA |
|
|
Source name |
in house
|
Organism |
Drosophila melanogaster |
Characteristics |
genotype: nSyb-GAL4 number of cells: 1 orn type: labels 44 ORN types
|
Treatment protocol |
None
|
Growth protocol |
None
|
Extracted molecule |
total RNA |
Extraction protocol |
None Modified SMART-seq2 (Li et al. 2017)
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
RACE |
Instrument model |
NextSeq 550 |
|
|
Description |
Single cell df_libs.csv, htseq.tab
|
Data processing |
library strategy: 5’ RACE RNA-seq alignment (STAR 2.4.2a, ENCODE standard options, except --outFilterScoreMinOverLread 0.4 --outFilterMatchNminOverLread 0.4 -- outFilterMismatchNmax 999 --outFilterMismatchNoverLmax 0.04) gene count (HTSeq-count 0.7.1, default options, except -m intersection-strict) Genome_build: Dmel r6.10 Supplementary_files_format_and_content: df_htseq_ORN.csv, df_libs_ORN.csv
|
|
|
Submission date |
Jan 03, 2020 |
Last update date |
Jan 04, 2020 |
Contact name |
Hongjie Li |
E-mail(s) |
hongjie.li@bcm.edu
|
Organization name |
Baylor College of Medicine
|
Street address |
one Baylor Plaza
|
City |
Houston |
State/province |
TX |
ZIP/Postal code |
77030 |
Country |
USA |
|
|
Platform ID |
GPL22106 |
Series (1) |
GSE143038 |
Single-cell Transcriptomes Reveal Diverse Regulatory Strategies for Olfactory Receptor Expression and Axon Targeting |
|
Relations |
BioSample |
SAMN13720048 |
SRA |
SRX7498918 |