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Sample GSM425 Query DataSets for GSM425
Status Public on Jul 20, 2001
Title circadian rhythm time at 0,12 single
Sample type RNA
 
Channel 1
Source name time at 0 hours
Organism Arabidopsis thaliana
Extracted molecule total RNA
 
Channel 2
Source name time at 12 hours
Organism Arabidopsis thaliana
Extracted molecule total RNA
 
 
Description Category: Development
Subcategory: Rhythm
Scanning Software: ScanAlyze
Software version: 2.44
Scanning parameters:
Keywords = circadian rhythm
Lot batch = R28
 
Submission date Jul 20, 2001
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL13
Series (1)
GSE4 Diurnal and Circadian-Regulated Genes in Arabidopsis

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOP BOT LEFT RIGHT UNF_VALUE
1 856 268 28955 41030 41006 351 24 21 36943 36964 .938 0 .351 1.365 97 99 .706 .784 1.416 1.276 1.206 1330 108 122 121 135 .351
2 416 256 3230 5200 5193 188 7 6 4678 4684 .833 0 .534 1.656 96 98 .622 .69 1.608 1.448 1.28 1234 108 122 142 156 .534
3 333 217 2316 2966 2960 135 6 5 2667 2672 .85 0 .204 1.337 90 96 .782 .868 1.278 1.152 1.033 1255 108 122 163 177 .204
4 328 189 1885 2601 2587 154 14 12 2331 2343 .792 0 .306 1.222 77 87 .729 .809 1.372 1.237 1.065 1255 108 122 185 199 .306
5 364 201 5209 7378 7358 180 20 18 6628 6646 .915 0 .348 1.39 90 93 .708 .786 1.412 1.272 1.307 1241 108 122 206 220 .348
6 378 214 4108 5824 5803 175 21 18 5228 5246 .884 0 .348 1.381 92 97 .708 .786 1.413 1.273 1.238 1255 108 122 227 241 .348
7 355 207 4192 5547 5508 178 39 35 4962 4997 .842 0 .243 1.354 91 96 .761 .845 1.314 1.184 1.037 1248 108 122 249 263 .243
8 327 177 3581 4483 4441 180 42 37 4001 4038 .886 0 .16 1.201 96 94 .806 .895 1.24 1.117 1.126 1241 108 122 270 284 .16
9 294 169 879 1185 1158 153 27 24 1043 1067 .595 0 .247 1.107 76 91 .759 .843 1.318 1.187 .698 1255 108 122 291 305 .247
10 297 198 927 1115 1111 131 4 3 1001 1004 .504 0 .111 1.133 87 96 .835 .926 1.198 1.08 .512 1248 108 122 313 327 .111
11 313 199 8390 11527 11525 127 2 1 10383 10384 .925 0 .307 1.34 96 96 .728 .808 1.374 1.238 1.279 1241 108 122 334 348 .307
12 314 176 2626 3560 3552 147 8 7 3200 3207 .849 0 .285 1.346 83 95 .739 .821 1.353 1.219 1.109 1255 108 122 355 369 .285
13 323 171 4292 5778 5751 180 27 24 5181 5205 .894 0 .272 1.369 97 100 .746 .828 1.34 1.207 1.212 1248 108 122 377 391 .272
14 317 172 3311 4403 4380 164 23 20 3947 3967 .868 0 .253 1.295 90 94 .756 .839 1.323 1.192 1.116 1241 108 122 398 412 .253
15 313 191 1533 2266 2256 136 10 9 2032 2041 .727 0 .407 1.387 86 91 .679 .754 1.472 1.326 1.03 1255 108 122 419 433 .407
16 311 191 2478 3923 3901 140 22 19 3515 3534 .782 0 .504 1.647 98 96 .635 .705 1.574 1.418 1.209 1248 108 122 441 455 .504
17 309 163 5043 6905 6874 247 31 27 6193 6220 .879 0 .296 1.331 95 96 .734 .814 1.363 1.228 1.238 1241 108 122 462 476 .296
18 404 186 36960 47362 47324 371 38 34 42634 42668 .923 0 .206 1.358 98 100 .781 .867 1.28 1.154 1.12 1255 108 122 483 497 .206
19 473 205 8237 12881 12842 324 39 35 11569 11604 .929 0 .49 1.598 94 97 .641 .712 1.559 1.405 1.454 1248 108 122 505 519 .49
20 366 156 8629 12037 12018 191 19 17 10827 10844 .935 0 .327 1.375 87 92 .718 .797 1.393 1.255 1.224 1371 107 121 526 540 .327

Total number of rows: 12800

Table truncated, full table size 1555 Kbytes.




Supplementary data files not provided
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