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Sample GSM425395 Query DataSets for GSM425395
Status Public on Apr 18, 2011
Title control monocyte
Sample type RNA
 
Source name peripheral blood monocyte
Organism Homo sapiens
Characteristics cell type: peripheral blood monocyte
pooled rna: from 5 patients
disease status: control patient
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy Kit according to manufacturer's protocol
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description Peripheral blood samples were collected from 5 healthy control patients and monocytes were isolated using CD14+ magnetic beads.
Data processing GeneSpring 7.3 GC-RMA algorithm
 
Submission date Jul 08, 2009
Last update date Sep 01, 2016
Contact name Szilard Poliska
E-mail(s) poliska@dote.hu
Phone +3652416432
Organization name University of Debrecen
Department Biochemistry and Molecular Biology
Lab Nuclear Hormone Receptor Research Laboratory
Street address Egyetem ter 1.
City Debrecen
ZIP/Postal code H-4012
Country Hungary
 
Platform ID GPL96
Series (1)
GSE16972 COPD-Specific Gene Expression Signatures of Alveolar Macrophages as well as Peripheral Blood Monocytes Overlap and Correlate with Lung Function
Relations
Reanalyzed by GSE86363

Data table header descriptions
ID_REF
VALUE GC-RMA (GeneSpring 7.3) normalized signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 366.594 P 0.00933744
AFFX-BioB-M_at 823.31 P 0.000581214
AFFX-BioB-3_at 315.462 P 0.00499819
AFFX-BioC-5_at 1107.65 P 0.000258358
AFFX-BioC-3_at 574.264 P 0.000581214
AFFX-BioDn-5_at 931.077 P 0.00010954
AFFX-BioDn-3_at 7911.43 P 0.000445901
AFFX-CreX-5_at 11296.3 P 4.42873e-05
AFFX-CreX-3_at 16986.7 P 4.42873e-05
AFFX-DapX-5_at 34.9777 A 0.165861
AFFX-DapX-M_at 56.5788 A 0.165861
AFFX-DapX-3_at 12.8945 A 0.737173
AFFX-LysX-5_at 7.34167 A 0.749204
AFFX-LysX-M_at 27.1606 A 0.699394
AFFX-LysX-3_at 39.3659 A 0.185131
AFFX-PheX-5_at 5.45163 A 0.9273
AFFX-PheX-M_at 23.3111 A 0.749204
AFFX-PheX-3_at 77.0632 A 0.455413
AFFX-ThrX-5_at 7.79437 A 0.804734
AFFX-ThrX-M_at 32.0599 A 0.544587

Total number of rows: 22283

Table truncated, full table size 665 Kbytes.




Supplementary file Size Download File type/resource
GSM425395.CEL.gz 3.5 Mb (ftp)(http) CEL
GSM425395.CHP.gz 119.8 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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