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Sample GSM42565 Query DataSets for GSM42565
Status Public on Mar 01, 2005
Title (ratio profile 1 +pol) wildtype CD4+ alpha beta T cells vs. LATY136F CD4+ alpha beta T cells
Sample type RNA
 
Channel 1
Source name wildtype CD4+ alpha beta T cells
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name LATY136F CD4+ alpha beta T cells
Organism Mus musculus
Extracted molecule total RNA
 
 
Description ratio profile (dye-reversal: +polarity)
CD4+ alpha beta T cells were positively sorted (FACSDiva) from wildtype or from LatY136F spleens using MACS and anti-CD4 beads
 
Submission date Feb 17, 2005
Last update date May 27, 2005
Contact name Hans-Joachim Mollenkopf
E-mail(s) mollenkopf@mpiib-berlin.mpg.de
Phone +49 30 28460 482
Organization name Max-Planck-Institute for Infection Biology
Lab Microarray/Genomics Core Facility
Street address Charitéplatz 1
City Berlin
ZIP/Postal code 10117
Country Germany
 
Platform ID GPL1868
Series (2)
GSE2286 (ratio exp) LATY136F CD4+ alpha beta T cells
GSE2289 (dye reversal) wildtype CD4+ alpha beta T cells vs. LATY136F CD4+ alpha beta T cells

Data table header descriptions
ID_REF
Fold Change value representing how many fold a gene is up- or down-regulated relative to the baseline
P-value value describing the confidence that the gene's expression ratio reflects a change in expression
Intensity1 Cy3 absolute intensity measurement after background substraction and normalization
Intensity2 Cy5 absolute intensity measurement after background substraction and normalization
Log(Intensity) log10 of the average of intensity1 and intensity2
Ratio normalized signal intensity2 devided by signal intensity1
VALUE log10 of the expression ratio
Log(Error) error in the log ratio
X Dev difference between the experiment and baseline intensity devided by the standard deviation of the difference
Accession # GenBank accession number
Sequence Name(s) sequence name
Sequence Description sequence description

Data table
ID_REF Fold Change P-value Intensity1 Intensity2 Log(Intensity) Ratio VALUE Log(Error) X Dev Accession # Sequence Name(s) Sequence Description
633390 7.59102 1.33E-18 159.29018 1209.17432 2.64234 7.59102 0.8803 0.1 8.803 NM_008042 Fprl1 formyl peptide receptor-like 1
633391 2.96551 2.35E-06 6151.48877 18241.07422 4.02502 2.96551 0.4721 0.1 4.721 NM_016715 Tslpr "thymic stromal-derived lymphopoietin, receptor"
633392 1.08036 0.7371 12037.67578 13005.07422 4.09733 1.08036 0.03357 0.1 0.3357 AI256499 AI256499 "EST, Weakly similar to 0806162A ATPase 6 [M.musculus]"
633393 1.40702 1 43208.53516 60799.29688 4.70973 1.40702 0.1483 AI462013 AI462013 "ESTs, Highly similar to HYPOTHETICAL 272.0 KD PROTEIN C50C3.6 IN CHROMOSOME III [Caenorhabditis elegans]"
633394 1.43781 0.41676 67.90838 97.63151 1.91076 1.43781 0.1577 0.1942 0.81205 AI662810 AI662810 ESTs
633395 2.50265 0.00335 76.07603 190.40865 2.08047 2.50265 0.3984 0.1358 2.93373 NM_008374 Il9r interleukin 9 receptor
633396 -1.02159 0.9261 220.34512 215.68903 2.33847 0.97887 -0.00927 0.1 -0.09275 NM_009981 Pcyt1a "phosphate cytidylyltransferase 1, choline, alpha isoform"
633397 1.56279 0.07075 129.19055 201.91801 2.2082 1.56279 0.1939 0.1073 1.80708 AI894170 AI894170 "ESTs, Moderately similar to 5-METHYLTETRAHYDROFOLATE--HOMOCYSTEINE METHYLTRANSFERASE [Escherichia coli]"
633398 -1.56351 0.05226 96075.96875 61446.85156 4.88556 0.63959 -0.1941 0.1 -1.941 AW455556 AW455556 "ESTs, Weakly similar to CG11399 gene product [D.melanogaster]"
633399 25.70396 3.55E-33 875.9726 22498.38867 3.64732 25.70396 1.41 0.1175 12 NM_021443 AB023418 cDNA sequence AB023418
633400 -1.24592 0.33963 9031.38281 7248.75439 3.90801 0.80262 -0.09549 0.1 -0.9549 AI451221 AI451221 ESTs
633401 1.28145 0.28148 654.83508 839.07538 2.86997 1.28145 0.1077 0.1 1.077 AI448098 AI448098 ESTs
633402 -1.30227 0.25138 758.53204 582.48315 2.82263 0.76789 -0.1147 0.1 -1.147 BE946070 BE946070 "ESTs, Weakly similar to ORF YKL201c [S.cerevisiae]"
633403 -1.41906 0.28916 135.56749 95.53935 2.05617 0.70469 -0.152 0.1434 -1.05997 NM_011160 Prkg1 "protein kinase, cGMP-dependent, type I"
633404 1.40378 0.14075 3096.24512 4345.96387 3.56446 1.40378 0.1473 0.1 1.473 BF456565 BF456565 "ESTs, Weakly similar to putative membrane associated progesterone receptor component [M.musculus]"
633405 -1.24595 0.33958 474.67703 380.97757 2.62865 0.8026 -0.0955 0.1 -0.955 NM_008308 Htr1a 5-hydroxytryptamine (serotonin) receptor 1A
633406 -1.0713 0.76486 1178.97217 1100.5 3.05655 0.93345 -0.02991 0.1 -0.2991 NM_010591 Jun Jun oncogene
633407 -1.36364 0.20296 191.66704 140.55774 2.2152 0.73333 -0.1347 0.1058 -1.27316 AV254337 AV254337 "EST, Moderately similar to NEK1_MOUSE SERINE/THREONINE-PROTEIN KINASE NEK1 [M.musculus]"
633408 1.42692 0.30686 89.76757 128.09325 2.03032 1.42692 0.1544 0.1511 1.02184 NM_013622 Oprd1 "opioid receptor, delta 1"
633409 1.40055 0.14347 616.50684 863.51147 2.8631 1.40055 0.1463 0.1 1.463 AV374708 AV374708 "ESTs, Highly similar to implantation-associated protein [R.norvegicus]"

Total number of rows: 8014

Table truncated, full table size 1049 Kbytes.




Supplementary file Size Download File type/resource
GSM42565.tif.gz 30.2 Mb (ftp)(http) TIFF

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