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Sample GSM427 Query DataSets for GSM427
Status Public on Jul 20, 2001
Title circadian rhythm time at 36,24
Sample type RNA
 
Channel 1
Source name time at 36 hours
Organism Arabidopsis thaliana
Extracted molecule total RNA
 
Channel 2
Source name time at 24 hours
Organism Arabidopsis thaliana
Extracted molecule total RNA
 
 
Description Category: Development
Subcategory: Rhythm
Scanning Software: ScanAlyze
Software version: 2.44
Scanning parameters:
Keywords = circadian rhythm
Lot batch = R42
 
Submission date Jul 20, 2001
Last update date May 27, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL13
Series (1)
GSE4 Diurnal and Circadian-Regulated Genes in Arabidopsis

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOP BOT LEFT RIGHT
1 217 87 7621 9556 9556 99 0 9851 9851 .961 0 .37 1.225 87 88 .798 .774 1.254 1.293 1.211 1330 113 127 135 149
2 221 107 701 381 381 90 0 392 392 .339 0 -.839 .539 80 85 1.84 1.788 .544 .559 .224 1242 113 127 156 170
3 206 83 702 401 401 75 0 413 413 .55 0 -.765 .566 78 73 1.751 1.7 .571 .588 .323 1241 113 127 178 192
4 193 66 608 215 215 69 0 221 221 .493 0 -1.46 .358 69 58 2.828 2.751 .354 .363 .2 1242 113 127 199 213
5 200 66 683 847 847 72 0 873 873 .61 0 .354 1.356 80 78 .806 .782 1.24 1.278 .697 1247 113 127 220 234
6 225 82 2136 1396 1396 87 0 1439 1439 .796 0 -.57 .638 83 86 1.53 1.484 .654 .674 .546 1223 114 128 241 255
7 222 100 927 1123 1123 77 0 1157 1157 .695 0 .32 1.252 88 83 .825 .801 1.211 1.248 .833 1224 114 128 263 277
8 213 81 664 837 837 73 0 862 862 .631 0 .377 1.328 79 83 .793 .77 1.261 1.298 .686 1216 114 128 284 298
9 215 76 231 135 135 85 0 139 139 .095 0 -.733 .502 53 57 1.711 1.662 .584 .602 .053 1229 114 128 305 319
10 250 99 320 144 144 90 0 148 148 .184 0 -1.112 .466 58 63 2.222 2.162 .45 .463 .073 1231 114 128 327 341
11 257 109 4614 2130 2130 82 0 2195 2195 .919 0 -1.072 .431 77 80 2.166 2.102 .462 .476 .425 1187 115 129 348 362
12 231 85 422 286 286 75 0 294 294 .35 0 -.521 .868 69 65 1.476 1.435 .678 .697 .199 1190 115 129 369 383
13 234 84 2897 1656 1656 74 0 1707 1707 .855 0 -.763 .539 87 89 1.749 1.697 .572 .589 .502 1194 115 129 391 405
14 221 91 385 322 322 64 0 331 331 .31 0 -.218 .746 70 71 1.196 1.163 .836 .86 .23 1192 115 129 412 426
15 236 94 396 259 259 65 0 267 267 .244 0 -.569 .527 71 73 1.529 1.483 .654 .674 .134 1186 115 129 433 447
16 250 102 7248 1332 1332 67 0 1373 1373 .876 0 -2.4 .183 83 82 5.441 5.279 .184 .189 .171 1156 116 130 454 468
17 290 115 890 901 901 141 0 928 928 .742 0 .06 .819 76 82 .988 .959 1.012 1.043 .881 1159 116 130 476 490
18 281 110 17917 29399 29399 150 0 30308 30308 .966 0 .758 1.626 96 99 .609 .591 1.641 1.692 1.609 1150 116 130 497 511
19 237 97 2782 1923 1923 75 0 1982 1982 .891 0 -.489 .713 84 84 1.447 1.404 .691 .712 .618 1152 116 130 518 532
20 229 82 3038 1076 1076 65 0 1109 1109 .8 0 -1.454 .35 87 79 2.823 2.739 .354 .365 .314 1308 116 130 540 554

Total number of rows: 12800

Table truncated, full table size 1467 Kbytes.




Supplementary data files not provided
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