NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM42844 Query DataSets for GSM42844
Status Public on Jul 20, 2005
Title MM V IM 10.5dpc_mean transf.txt column 18
Sample type RNA
 
Channel 1
Source name 10.5dpc Intermediate Mesenchyme
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name 10.5dpc Metanephric mesoderm
Organism Mus musculus
Extracted molecule total RNA
 
 
Description Sample; 4
File Name; MM V IM 10.5dpc_mean transf.txt
comparison; 1
Array Design; Mouse Compugen 22K Oligo
Author; Sean Grimmond
Common Reference (Yes/No, ID); none
Concentration; 100
Developmental Stage; embryonic
Image Analysis Software; Imagene5.5
Labeling Protocol; Amino Allyl Message Amp (Ambion)
Organ/Organism part; kidney
Organism; Mus musculus
Organization; IMB, UQ, St Lucia, Australia
RNA type; aRNA
Sample Source; primary tissue
Sex; both
Age; 10.5
Sampling Method; dissection
Dye Swap; red/green; green/red
To account for dye swap, the signal channel and control channel measurements for sample(s) 3-4 were reversed. A Lowess curve was fit to the log-intensity versus log-ratio plot. 20.0% of the data was used to calculate the Lowess fit at each point. This curve was used to adjust the control value for each measurement. If the control channel was lower than 10 then 10 was used instead.
 
Submission date Feb 18, 2005
Last update date Jul 20, 2005
Contact name Darrin F Taylor
E-mail(s) d.taylor@imb.uq.edu.au
Phone +61 7 3346 2607
Organization name Institute for Molecular Bioscience, Uni of Qld
Department Genomics and Bioinformatics
Lab Expression Genomics Lab
Street address Research Rd
City St Lucia
State/province Qld
ZIP/Postal code 4072
Country Australia
 
Platform ID GPL1873
Series (1)
GSE2301 10.5dpc Metanephric Mesenchyme V Intermediate Mesoderm

Data table header descriptions
ID_REF ID_REF
Raw Value Type: float; Scale: linear_scale
Control Value Type: float; Scale: linear_scale
VALUE log ratio (log2 of PRE_VALUE)
Flags Type: AbsoluteCallTypeEnum; Scale: unscaled
PRE_VALUE Normalized Value Type: float; Scale: log_base_e

Data table
ID_REF Raw Value Control Value VALUE Flags PRE_VALUE
CS:02:CGEN_MOUSE_3000002_1 1.245 582.7 1.0949123 Present 2.136
CS:03:CGEN_MOUSE_3000003_1 -64.6 493.8 -6.6438563 Present 0.01
CS:04:CGEN_MOUSE_3000004_1 72 86.74 -0.2688173 Present 0.83
CS:05:CGEN_MOUSE_3000005_1 Undef Undef Undef
CS:06:CGEN_MOUSE_3000006_1 899.5 1.361 -0.5972783 Present 0.661
CS:07:CGEN_MOUSE_3000007_1 251 436 -0.7958593 Present 0.576
CS:08:CGEN_MOUSE_3000008_1 209.2 175.3 0.2545943 Present 1.193
CS:09:CGEN_MOUSE_3000009_1 127.8 14.67 3.1233353 Present 8.714
CS:10:CGEN_MOUSE_3000010_1 Undef Undef Undef
CS:11:CGEN_MOUSE_3000011_1 175.3 255.9 -0.5458243 Present 0.685
CS:12:CGEN_MOUSE_3000012_1 261 345.9 -0.4054513 Present 0.755
CS:13:CGEN_MOUSE_3000013_1 107.4 140.1 -0.3827023 Present 0.767
CS:14:CGEN_MOUSE_3000014_1 964.5 1.069 -0.1488013 Present 0.902
CS:15:CGEN_MOUSE_3000015_1 268.8 317 -0.2378643 Present 0.848
CS:16:CGEN_MOUSE_3000016_1 54.5 74.97 -0.4599733 Present 0.727
CS:17:CGEN_MOUSE_3000017_1 129.9 156.7 -0.2705563 Present 0.829
CS:18:CGEN_MOUSE_3000018_1 20.29 10 1.0207693 Absent 2.029
CS:19:CGEN_MOUSE_3000019_1 114.4 169.6 -0.5670413 Present 0.675
CS:20:CGEN_MOUSE_3000020_1 838.1 535.7 0.6461633 Present 1.565
CS:21:CGEN_MOUSE_3000021_1 -65.04 600.7 -6.6438563 Present 0.01

Total number of rows: 22702

Table truncated, full table size 1404 Kbytes.




Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap