NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM429 Query DataSets for GSM429
Status Public on Jul 20, 2001
Title circadian rhythm time at 12,0
Sample type RNA
 
Channel 1
Source name time at 12 hours
Organism Arabidopsis thaliana
Extracted molecule total RNA
 
Channel 2
Source name time at 0 hours
Organism Arabidopsis thaliana
Extracted molecule total RNA
 
 
Description Category: Development
Subcategory: Rhythm
Scanning Software: ScanAlyze
Software version: 2.33
Scanning parameters:
Keywords = circadian rhythm
Lot batch = R2
 
Submission date Jul 20, 2001
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL13
Series (1)
GSE4 Diurnal and Circadian-Regulated Genes in Arabidopsis

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOP BOT LEFT RIGHT UNF_VALUE
1 237 48 19588 24272 24191 256 81 29 8797 8826 0 0 -1.155 1.27 94 89 .81 2.227 1.235 .449 0 1365 74 88 121 135 -1.155
2 261 41 2328 3195 3110 312 85 30 1131 1161 .787 0 -1.041 1.405 88 86 .749 2.058 1.336 .486 .995 1255 75 89 143 157 -1.041
3 122 31 782 1998 1901 238 97 35 691 726 .476 0 -.178 2.493 85 87 .411 1.132 2.431 .884 .987 1241 75 89 164 178 -.178
4 106 29 842 1364 1243 231 121 44 452 496 .704 0 -.897 1.755 83 85 .677 1.863 1.476 .537 .884 1255 75 89 185 199 -.897
5 106 28 2186 8763 8643 303 120 43 3143 3186 0 0 .524 4.748 91 92 .253 .696 3.954 1.438 0 1276 75 89 207 221 .524
6 96 27 1871 8206 8082 250 124 45 2939 2984 0 0 .652 4.164 91 93 .232 .637 4.32 1.571 0 1241 76 90 228 242 .652
7 125 31 1290 4150 4005 315 145 52 1457 1509 .713 0 .176 3.466 87 87 .322 .885 3.105 1.129 2.062 1255 76 90 249 263 .176
8 114 29 1434 5239 5077 302 162 58 1847 1905 0 0 .365 3.727 91 92 .282 .776 3.54 1.288 0 1255 76 90 271 285 .365
9 85 26 264 706 546 246 160 58 198 256 .41 0 -.415 2.155 76 72 .484 1.333 2.068 .75 1.407 1255 76 90 292 306 -.415
10 95 27 444 1146 980 300 166 60 356 416 .207 0 -.319 2.311 87 88 .453 1.247 2.207 .802 .543 1276 76 90 314 328 -.319
11 120 28 1497 7183 7011 362 172 62 2550 2612 0 0 .768 4.591 87 85 .214 .587 4.683 1.703 0 1241 77 91 335 349 .768
12 112 27 327 1083 917 323 166 60 333 393 .282 0 .026 3.352 82 85 .357 .982 2.804 1.018 .576 1248 77 91 356 370 .026
13 96 29 1205 2892 2717 291 175 63 988 1051 .612 0 -.286 2.45 89 91 .444 1.22 2.255 .82 1.105 1262 77 91 378 392 -.286
14 98 30 724 951 798 261 153 55 290 345 .413 0 -1.32 1.187 87 85 .907 2.497 1.102 .401 .486 1262 77 91 399 413 -1.32
15 107 30 377 1470 1331 269 139 50 484 534 0 0 .36 2.556 83 85 .283 .779 3.531 1.284 0 1248 78 92 420 434 .36
16 98 27 445 2424 2285 270 139 50 831 881 .378 0 .901 5.797 83 87 .195 .535 5.135 1.867 1.559 1255 78 92 442 456 .901
17 87 26 1013 2663 2538 225 125 45 923 968 0 0 -.134 2.696 88 87 .399 1.098 2.505 .911 0 1248 78 92 463 477 -.134
18 287 29 26726 34068 33946 364 122 44 12344 12388 0 0 -1.114 1.3 94 94 .787 2.165 1.27 .462 0 1269 78 92 484 498 -1.114
19 284 29 3055 7464 7353 357 111 40 2674 2714 0 0 -.192 2.49 90 94 .415 1.142 2.407 .875 0 1281 78 92 506 520 -.192
20 90 25 1785 3757 3637 222 120 43 1323 1366 .54 0 -.432 2.156 88 94 .491 1.349 2.038 .741 1.137 1358 79 93 527 541 -.432

Total number of rows: 12800

Table truncated, full table size 1532 Kbytes.




Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap