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Status
Public on Jun 02, 2005
Title
Clof 24hr treated POOLED
Sample type
RNA
Source name
Liver
Organism
Rattus norvegicus Extracted molecule
total RNA
Description
Male SD rats were given a single dose of 1000mg/kg clofibrate using 0.9% saline as vehicle. Animal was sacrificed 24hrs post-dosing. Total RNA was extracted using the RNA STAT-60 kit from Tel-Test inc. Approximately 3.3ug of RNA from each sample was pooled (10ug total) and labeled according to the standard Affymetrix protocol. Signal values were calculated using the MAS 5.0 algorithm, with global scaling to 1500.
Submission date
Feb 22, 2005
Last update date
Jun 02, 2005
Contact name
Keith M Goldstein
E-mail(s)
goldsteinkm@lilly.com Organization name
Eli Lilly & Co.
Department
Investigative Toxicology
Lab
Keith Goldstein
Street address
Lilly Corporate Center
City
Indianapolis
State/province
IN
ZIP/Postal code
46285
Country
USA
Platform ID
GPL85 Series (1)
GSE2303 Rat liver response to Clofibrate, DEHP or VPA
Data table header descriptions ID_REF Affymetrix probeset ID
VALUE Signal from MAS5 with global scaling to 1500
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-MurIL2_at
38.2
A
0.852061
AFFX-MurIL10_at
49.4
A
0.544587
AFFX-MurIL4_at
63.5
A
0.60308
AFFX-MurFAS_at
101.8
A
0.340661
AFFX-BioB-5_at
1252.5
P
0.002023
AFFX-BioB-M_at
4050
P
0.000095
AFFX-BioB-3_at
1302.5
P
0.000258
AFFX-BioC-5_at
7002
P
0.00007
AFFX-BioC-3_at
4741.3
P
0.00007
AFFX-BioDn-5_at
5802.5
P
0.00034
AFFX-BioDn-3_at
30529.3
P
0.000052
AFFX-CreX-5_at
64480.8
P
0.000044
AFFX-CreX-3_at
94317.5
P
0.000044
AFFX-BioB-5_st
296
A
0.175328
AFFX-BioB-M_st
336.3
A
0.340661
AFFX-BioB-3_st
58.4
A
0.824672
AFFX-BioC-5_st
98.3
A
0.783476
AFFX-BioC-3_st
15.5
A
0.883887
AFFX-BioDn-5_st
544.1
A
0.123572
AFFX-BioDn-3_st
504.2
A
0.227636
8799 256 Kbytes .Supplementary file Size Download File type/resource GSM42959.CEL.gz
1.7 Mb
(ftp) (http) CEL
GSM42959.CHP.gz
2.7 Mb
(ftp) (http) CHP
GSM42959.EXP.gz
495 b
(ftp) (http) EXP
Processed data provided as supplementary file
