NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM431 Query DataSets for GSM431
Status Public on Jul 20, 2001
Title circadian rhythm time at 0,12
Sample type RNA
 
Channel 1
Source name time at 0 hours
Organism Arabidopsis thaliana
Extracted molecule total RNA
 
Channel 2
Source name time at 12 hours
Organism Arabidopsis thaliana
Extracted molecule total RNA
 
 
Description Category: Development
Subcategory: Rhythm
Scanning Software: ScanAlyze
Software version: 2.33
Scanning parameters:
Keywords = circadian rhythm
Lot batch = R6
 
Submission date Jul 20, 2001
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL13
Series (1)
GSE4 Diurnal and Circadian-Regulated Genes in Arabidopsis

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOP BOT LEFT RIGHT UNF_VALUE
1 205 126 17916 49472 49115 494 357 134 18464 18598 0 0 .043 2.607 92 96 .365 .97 2.741 1.031 0 1357 104 118 58 72 .043
2 201 123 2913 11468 11109 486 359 134 4177 4311 0 0 .52 3.991 89 91 .262 .697 3.814 1.434 0 1275 104 118 79 93 .52
3 204 120 3200 9621 9268 470 353 132 3484 3616 0 0 .123 2.819 87 92 .345 .918 2.896 1.089 0 1254 104 118 101 115 .123
4 221 132 1442 6154 5763 500 391 146 2167 2313 0 0 .588 3.985 75 81 .25 .665 3.997 1.503 0 1241 104 118 122 136 .588
5 227 131 6666 13260 12838 546 422 158 4826 4984 0 0 -.466 1.964 89 87 .519 1.381 1.926 .724 0 1255 104 118 143 157 -.466
6 211 128 4626 8905 8448 575 457 171 3176 3347 0 0 -.543 1.862 88 87 .548 1.457 1.826 .687 0 1275 103 117 165 179 -.543
7 206 125 3659 10255 9791 598 464 174 3681 3855 0 0 .009 2.648 91 93 .374 .994 2.676 1.006 0 1261 103 117 186 200 .009
8 206 115 5436 12589 12134 591 455 171 4561 4732 0 0 -.253 2.372 91 93 .448 1.192 2.232 .839 0 1261 103 117 207 221 -.253
9 204 116 343 1664 1214 570 450 169 456 625 .405 0 .411 4.258 73 76 .283 .752 3.539 1.329 1.174 1248 103 117 229 243 .411
10 211 120 756 3059 2602 581 457 171 979 1150 .552 0 .373 3.53 86 85 .291 .772 3.442 1.295 1.703 1241 103 117 250 264 .373
11 215 121 3809 6455 6004 579 451 169 2257 2426 0 0 -.755 1.629 85 87 .634 1.688 1.576 .593 0 1281 102 116 271 285 -.755
12 213 128 5218 13912 13448 619 464 174 5056 5230 0 0 -.046 2.688 84 91 .388 1.032 2.577 .969 0 1268 102 116 293 307 -.046
13 207 120 3800 10711 10202 659 509 191 3835 4026 0 0 .013 2.675 89 91 .372 .991 2.685 1.009 0 1247 102 116 314 328 .013
14 205 124 3024 9294 8762 645 532 200 3293 3493 0 0 .123 2.895 87 87 .345 .918 2.897 1.089 0 1255 102 116 335 349 .123
15 195 114 902 2979 2463 626 516 193 926 1119 .604 0 .038 2.934 79 78 .366 .974 2.731 1.027 1.508 1248 102 116 357 371 .038
16 201 113 1965 3146 2610 639 536 201 981 1182 .674 0 -1.002 1.32 90 89 .753 2.003 1.328 .499 .918 1276 101 115 378 392 -1.002
17 217 130 7481 18522 17967 683 555 208 6755 6963 0 0 -.147 2.535 92 94 .416 1.107 2.402 .903 0 1301 101 115 399 413 -.147
18 207 121 23068 52605 52069 692 536 201 19575 19776 0 0 -.237 2.187 94 97 .443 1.178 2.257 .849 0 1277 101 115 421 435 -.237
19 211 121 5194 13261 12694 702 567 213 4772 4985 0 0 -.122 2.529 92 91 .409 1.088 2.444 .919 0 1247 101 115 442 456 -.122
20 219 131 4847 14207 13650 682 557 209 5131 5340 0 0 .082 2.757 91 91 .355 .945 2.816 1.059 0 1351 101 115 463 477 .082

Total number of rows: 12800

Table truncated, full table size 1562 Kbytes.




Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap