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| Status |
Public on Jun 03, 2005 |
| Title |
SAGE_Drosophila |
| Sample type |
SAGE |
| Anchor |
NlaIII
|
| Tag Count |
244313 |
| Tag Length |
10 |
| |
|
| Source name |
embryo, embryo with radiation, larvae, pupae, male and female adults, and testis
|
| Organism |
Drosophila melanogaster |
| Extracted molecule |
polyA RNA |
| |
|
| Description |
Keywords = SAGE
Keywords = novel transcript
Keywords = Drosophila
Keywords = genome
Keywords = EST
Keywords = low abundant
Lee S et al. Detecting novel low-abundant transcripts in Drosophila. RNA. 2005 Jun;11(6):939-46.
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| |
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| Submission date |
Feb 23, 2005 |
| Last update date |
Nov 19, 2008 |
| Contact name |
San Ming Wang |
| E-mail(s) |
swang1@northwestern.edu
|
| Phone |
224-364-7491
|
| Fax |
224-364-5003
|
| Organization name |
ENH Research Institute, Northwestern University
|
| Department |
Center for Functional Genomics
|
| Street address |
1001 University Place
|
| City |
Evanston |
| State/province |
IL |
| ZIP/Postal code |
60062 |
| Country |
USA |
| |
|
| Platform ID |
GPL1882 |
| Series (1) |
| GSE2347 |
Detecting novel low-abundant transcripts in Drosophila |
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| Data table header descriptions |
| TAG |
Ten base SAGE tag |
| COUNT |
Absolute tag count |
| TPM |
tags per million |
| Data table |
| TAG |
COUNT |
TPM |
| AAAAACACGC |
4247 |
17383.44 |
| GCTAAAATGA |
1858 |
7605.00 |
| CTGTTATGTA |
1791 |
7330.76 |
| CTACTATCAA |
1327 |
5431.56 |
| CATCTAATCT |
1262 |
5165.50 |
| TTTTTTGTTA |
1229 |
5030.43 |
| GTTGCAACGG |
1203 |
4924.01 |
| GCGATGGCGG |
1120 |
4584.28 |
| GGCTTCGGTC |
1089 |
4457.40 |
| GCCGGCCAGT |
1040 |
4256.83 |
| GTTGGCGATG |
1000 |
4093.11 |
| TTTGAACATT |
944 |
3863.90 |
| GCGCAGACTT |
902 |
3691.99 |
| CCTGCCGTGG |
891 |
3646.96 |
| ATCTTGAGTT |
833 |
3409.56 |
| ATCCTGAGTT |
818 |
3348.16 |
| GGAAAAAGCT |
807 |
3303.14 |
| TGTTCGCCAC |
796 |
3258.12 |
| TGCATTTTAA |
793 |
3245.84 |
| CTCACTGAAT |
776 |
3176.25 |
Total number of rows: 40823
Table truncated, full table size 734 Kbytes.
| Supplementary data files not provided |
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