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Sample GSM432970 Query DataSets for GSM432970
Status Public on Mar 26, 2010
Title Patient_02
Sample type RNA
 
Source name CD138 selected plasma cells
Organism Homo sapiens
Characteristics patient: 2
disease state: multiple myeloma
cell type: CD138+ selected plasma cells
risk score: 0.426605884261942
proliferation index: 6.47945020327462
Extracted molecule total RNA
Extraction protocol mRNA purification, cDNA synthesis, cRNA preparation, and hybridization to the Human Genome U133Plus 2.0 GeneChip microarrays (Affymetrix, Santa Clara, CA) were performed as previously described in PMID: 17105813
Label biotin
Label protocol mRNA purification, cDNA synthesis, cRNA preparation, and hybridization to the Human Genome U133Plus 2.0 GeneChip microarrays (Affymetrix, Santa Clara, CA) were performed as previously described PMID: 17105813
 
Hybridization protocol mRNA purification, cDNA synthesis, cRNA preparation, and hybridization to the Human Genome U133Plus 2.0 GeneChip microarrays (Affymetrix, Santa Clara, CA) were performed as previously described PMID: 17105814
Scan protocol mRNA purification, cDNA synthesis, cRNA preparation, and hybridization to the Human Genome U133Plus 2.0 GeneChip microarrays (Affymetrix, Santa Clara, CA) were performed as previously described PMID: 17105815
Description Gene expression data from CD138+ selected plasma cells
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
 
Submission date Jul 24, 2009
Last update date Mar 26, 2010
Contact name Yiming Zhou
E-mail(s) yzhou@uams.edu
Phone (501)296-1503 1413
Organization name Myeloma Institute for Research and Therapy
Street address 4301 West Markham St., Slot 776
City Little Rock
State/province AR
ZIP/Postal code 72205
Country USA
 
Platform ID GPL570
Series (1)
GSE17306 Plasma cells from 52 patients with multiple myeloma: mRNA and miRNA expression profiling

Data table header descriptions
ID_REF
VALUE MAS5.0 signal intensity

Data table
ID_REF VALUE
AFFX-BioB-5_at 9.410451352
AFFX-BioB-M_at 9.919608239
AFFX-BioB-3_at 8.636262089
AFFX-BioC-5_at 10.01443899
AFFX-BioC-3_at 10.49095113
AFFX-BioDn-5_at 11.90263891
AFFX-BioDn-3_at 13.09946288
AFFX-CreX-5_at 14.27064574
AFFX-CreX-3_at 14.54150806
AFFX-DapX-5_at 6.287250643
AFFX-DapX-M_at 6.059614856
AFFX-DapX-3_at 3.053111336
AFFX-LysX-5_at 6.033423002
AFFX-LysX-M_at 6.14363831
AFFX-LysX-3_at 6.061776198
AFFX-PheX-5_at 2.744161096
AFFX-PheX-M_at 2.887525271
AFFX-PheX-3_at 4.832890014
AFFX-ThrX-5_at 5.911691582
AFFX-ThrX-M_at 4.392317423

Total number of rows: 54675

Table truncated, full table size 1210 Kbytes.




Supplementary file Size Download File type/resource
GSM432970.cel.gz 5.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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