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Sample GSM432973 Query DataSets for GSM432973
Status Public on Mar 26, 2010
Title Patient_05
Sample type RNA
 
Source name CD138 selected plasma cells
Organism Homo sapiens
Characteristics patient: 5
disease state: multiple myeloma
cell type: CD138+ selected plasma cells
risk score: 0.313554125952036
proliferation index: 4.21059592508044
Extracted molecule total RNA
Extraction protocol mRNA purification, cDNA synthesis, cRNA preparation, and hybridization to the Human Genome U133Plus 2.0 GeneChip microarrays (Affymetrix, Santa Clara, CA) were performed as previously described in PMID: 17105813
Label biotin
Label protocol mRNA purification, cDNA synthesis, cRNA preparation, and hybridization to the Human Genome U133Plus 2.0 GeneChip microarrays (Affymetrix, Santa Clara, CA) were performed as previously described PMID: 17105813
 
Hybridization protocol mRNA purification, cDNA synthesis, cRNA preparation, and hybridization to the Human Genome U133Plus 2.0 GeneChip microarrays (Affymetrix, Santa Clara, CA) were performed as previously described PMID: 17105814
Scan protocol mRNA purification, cDNA synthesis, cRNA preparation, and hybridization to the Human Genome U133Plus 2.0 GeneChip microarrays (Affymetrix, Santa Clara, CA) were performed as previously described PMID: 17105815
Description Gene expression data from CD138+ selected plasma cells
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
 
Submission date Jul 24, 2009
Last update date Mar 26, 2010
Contact name Yiming Zhou
E-mail(s) yzhou@uams.edu
Phone (501)296-1503 1413
Organization name Myeloma Institute for Research and Therapy
Street address 4301 West Markham St., Slot 776
City Little Rock
State/province AR
ZIP/Postal code 72205
Country USA
 
Platform ID GPL570
Series (1)
GSE17306 Plasma cells from 52 patients with multiple myeloma: mRNA and miRNA expression profiling

Data table header descriptions
ID_REF
VALUE MAS5.0 signal intensity

Data table
ID_REF VALUE
AFFX-BioB-5_at 8.585338154
AFFX-BioB-M_at 9.156588753
AFFX-BioB-3_at 7.9489512
AFFX-BioC-5_at 10.1470777
AFFX-BioC-3_at 10.01010845
AFFX-BioDn-5_at 11.55650605
AFFX-BioDn-3_at 12.80582447
AFFX-CreX-5_at 14.15413773
AFFX-CreX-3_at 14.31949572
AFFX-DapX-5_at 5.439623138
AFFX-DapX-M_at 6.004501392
AFFX-DapX-3_at 3.277984747
AFFX-LysX-5_at 3.232660757
AFFX-LysX-M_at 5.292781749
AFFX-LysX-3_at 3.201633861
AFFX-PheX-5_at 5.040015679
AFFX-PheX-M_at 4.738767837
AFFX-PheX-3_at 4.749534268
AFFX-ThrX-5_at 3.548436625
AFFX-ThrX-M_at 5.928370323

Total number of rows: 54675

Table truncated, full table size 1210 Kbytes.




Supplementary file Size Download File type/resource
GSM432973.cel.gz 5.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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