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Sample GSM432974 Query DataSets for GSM432974
Status Public on Mar 26, 2010
Title Patient_06
Sample type RNA
 
Source name CD138 selected plasma cells
Organism Homo sapiens
Characteristics patient: 6
disease state: multiple myeloma
cell type: CD138+ selected plasma cells
risk score: 0.31954134395707
proliferation index: -0.333877228086332
Extracted molecule total RNA
Extraction protocol mRNA purification, cDNA synthesis, cRNA preparation, and hybridization to the Human Genome U133Plus 2.0 GeneChip microarrays (Affymetrix, Santa Clara, CA) were performed as previously described in PMID: 17105813
Label biotin
Label protocol mRNA purification, cDNA synthesis, cRNA preparation, and hybridization to the Human Genome U133Plus 2.0 GeneChip microarrays (Affymetrix, Santa Clara, CA) were performed as previously described PMID: 17105813
 
Hybridization protocol mRNA purification, cDNA synthesis, cRNA preparation, and hybridization to the Human Genome U133Plus 2.0 GeneChip microarrays (Affymetrix, Santa Clara, CA) were performed as previously described PMID: 17105814
Scan protocol mRNA purification, cDNA synthesis, cRNA preparation, and hybridization to the Human Genome U133Plus 2.0 GeneChip microarrays (Affymetrix, Santa Clara, CA) were performed as previously described PMID: 17105815
Description Gene expression data from CD138+ selected plasma cells
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
 
Submission date Jul 24, 2009
Last update date Mar 26, 2010
Contact name Yiming Zhou
E-mail(s) yzhou@uams.edu
Phone (501)296-1503 1413
Organization name Myeloma Institute for Research and Therapy
Street address 4301 West Markham St., Slot 776
City Little Rock
State/province AR
ZIP/Postal code 72205
Country USA
 
Platform ID GPL570
Series (1)
GSE17306 Plasma cells from 52 patients with multiple myeloma: mRNA and miRNA expression profiling

Data table header descriptions
ID_REF
VALUE MAS5.0 signal intensity

Data table
ID_REF VALUE
AFFX-BioB-5_at 9.415741768
AFFX-BioB-M_at 10.1204971
AFFX-BioB-3_at 8.388878339
AFFX-BioC-5_at 9.564340058
AFFX-BioC-3_at 8.751544059
AFFX-BioDn-5_at 12.22593041
AFFX-BioDn-3_at 13.52123236
AFFX-CreX-5_at 14.65639134
AFFX-CreX-3_at 14.7576921
AFFX-DapX-5_at 5.82527683
AFFX-DapX-M_at 5.259272487
AFFX-DapX-3_at 5.749534268
AFFX-LysX-5_at 5.285402219
AFFX-LysX-M_at 5.495055528
AFFX-LysX-3_at 4.902073579
AFFX-PheX-5_at 3.087462841
AFFX-PheX-M_at 3.087462841
AFFX-PheX-3_at 4.64385619
AFFX-ThrX-5_at 4.776103988
AFFX-ThrX-M_at 5.944858446

Total number of rows: 54675

Table truncated, full table size 1210 Kbytes.




Supplementary file Size Download File type/resource
GSM432974.cel.gz 5.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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