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Sample GSM432975 Query DataSets for GSM432975
Status Public on Mar 26, 2010
Title Patient_07
Sample type RNA
 
Source name CD138 selected plasma cells
Organism Homo sapiens
Characteristics patient: 7
disease state: multiple myeloma
cell type: CD138+ selected plasma cells
risk score: 0.51586790086378
proliferation index: 8.19473138862296
Extracted molecule total RNA
Extraction protocol mRNA purification, cDNA synthesis, cRNA preparation, and hybridization to the Human Genome U133Plus 2.0 GeneChip microarrays (Affymetrix, Santa Clara, CA) were performed as previously described in PMID: 17105813
Label biotin
Label protocol mRNA purification, cDNA synthesis, cRNA preparation, and hybridization to the Human Genome U133Plus 2.0 GeneChip microarrays (Affymetrix, Santa Clara, CA) were performed as previously described PMID: 17105813
 
Hybridization protocol mRNA purification, cDNA synthesis, cRNA preparation, and hybridization to the Human Genome U133Plus 2.0 GeneChip microarrays (Affymetrix, Santa Clara, CA) were performed as previously described PMID: 17105814
Scan protocol mRNA purification, cDNA synthesis, cRNA preparation, and hybridization to the Human Genome U133Plus 2.0 GeneChip microarrays (Affymetrix, Santa Clara, CA) were performed as previously described PMID: 17105815
Description Gene expression data from CD138+ selected plasma cells
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
 
Submission date Jul 24, 2009
Last update date Mar 26, 2010
Contact name Yiming Zhou
E-mail(s) yzhou@uams.edu
Phone (501)296-1503 1413
Organization name Myeloma Institute for Research and Therapy
Street address 4301 West Markham St., Slot 776
City Little Rock
State/province AR
ZIP/Postal code 72205
Country USA
 
Platform ID GPL570
Series (1)
GSE17306 Plasma cells from 52 patients with multiple myeloma: mRNA and miRNA expression profiling

Data table header descriptions
ID_REF
VALUE MAS5.0 signal intensity

Data table
ID_REF VALUE
AFFX-BioB-5_at 8.955359305
AFFX-BioB-M_at 9.325755173
AFFX-BioB-3_at 8.289557848
AFFX-BioC-5_at 10.33628339
AFFX-BioC-3_at 10.55918587
AFFX-BioDn-5_at 11.58435186
AFFX-BioDn-3_at 12.76607334
AFFX-CreX-5_at 14.07281928
AFFX-CreX-3_at 14.37638318
AFFX-DapX-5_at 5.997744026
AFFX-DapX-M_at 4.529820947
AFFX-DapX-3_at 2.867896464
AFFX-LysX-5_at 4.285402219
AFFX-LysX-M_at 6.441284272
AFFX-LysX-3_at 6.020146573
AFFX-PheX-5_at 2.350497247
AFFX-PheX-M_at 1.137503524
AFFX-PheX-3_at 4.378511623
AFFX-ThrX-5_at 4.822730148
AFFX-ThrX-M_at 6.059614856

Total number of rows: 54675

Table truncated, full table size 1210 Kbytes.




Supplementary file Size Download File type/resource
GSM432975.cel.gz 4.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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