NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM432983 Query DataSets for GSM432983
Status Public on Mar 26, 2010
Title Patient_15
Sample type RNA
 
Source name CD138 selected plasma cells
Organism Homo sapiens
Characteristics patient: 15
disease state: multiple myeloma
cell type: CD138+ selected plasma cells
risk score: 0.289521225859907
proliferation index: 6.69559555744128
Extracted molecule total RNA
Extraction protocol mRNA purification, cDNA synthesis, cRNA preparation, and hybridization to the Human Genome U133Plus 2.0 GeneChip microarrays (Affymetrix, Santa Clara, CA) were performed as previously described in PMID: 17105813
Label biotin
Label protocol mRNA purification, cDNA synthesis, cRNA preparation, and hybridization to the Human Genome U133Plus 2.0 GeneChip microarrays (Affymetrix, Santa Clara, CA) were performed as previously described PMID: 17105813
 
Hybridization protocol mRNA purification, cDNA synthesis, cRNA preparation, and hybridization to the Human Genome U133Plus 2.0 GeneChip microarrays (Affymetrix, Santa Clara, CA) were performed as previously described PMID: 17105814
Scan protocol mRNA purification, cDNA synthesis, cRNA preparation, and hybridization to the Human Genome U133Plus 2.0 GeneChip microarrays (Affymetrix, Santa Clara, CA) were performed as previously described PMID: 17105815
Description Gene expression data from CD138+ selected plasma cells
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
 
Submission date Jul 24, 2009
Last update date Mar 26, 2010
Contact name Yiming Zhou
E-mail(s) yzhou@uams.edu
Phone (501)296-1503 1413
Organization name Myeloma Institute for Research and Therapy
Street address 4301 West Markham St., Slot 776
City Little Rock
State/province AR
ZIP/Postal code 72205
Country USA
 
Platform ID GPL570
Series (1)
GSE17306 Plasma cells from 52 patients with multiple myeloma: mRNA and miRNA expression profiling

Data table header descriptions
ID_REF
VALUE MAS5.0 signal intensity

Data table
ID_REF VALUE
AFFX-BioB-5_at 8.957392293
AFFX-BioB-M_at 9.400239045
AFFX-BioB-3_at 8.604738534
AFFX-BioC-5_at 10.34229695
AFFX-BioC-3_at 10.74643034
AFFX-BioDn-5_at 11.36276574
AFFX-BioDn-3_at 12.66255712
AFFX-CreX-5_at 13.82741218
AFFX-CreX-3_at 13.87227087
AFFX-DapX-5_at 6.175923742
AFFX-DapX-M_at 5.402585758
AFFX-DapX-3_at 4.026800059
AFFX-LysX-5_at 5.255500733
AFFX-LysX-M_at 6.849248703
AFFX-LysX-3_at 5.022367813
AFFX-PheX-5_at 3.797012978
AFFX-PheX-M_at 3.232660757
AFFX-PheX-3_at 5.385431037
AFFX-ThrX-5_at 5.54225805
AFFX-ThrX-M_at 5.977279923

Total number of rows: 54675

Table truncated, full table size 1210 Kbytes.




Supplementary file Size Download File type/resource
GSM432983.cel.gz 5.5 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap