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Sample GSM432985 Query DataSets for GSM432985
Status Public on Mar 26, 2010
Title Patient_17
Sample type RNA
 
Source name CD138 selected plasma cells
Organism Homo sapiens
Characteristics patient: 17
disease state: multiple myeloma
cell type: CD138+ selected plasma cells
risk score: 0.586696129601375
proliferation index: 6.6119374910063
Extracted molecule total RNA
Extraction protocol mRNA purification, cDNA synthesis, cRNA preparation, and hybridization to the Human Genome U133Plus 2.0 GeneChip microarrays (Affymetrix, Santa Clara, CA) were performed as previously described in PMID: 17105813
Label biotin
Label protocol mRNA purification, cDNA synthesis, cRNA preparation, and hybridization to the Human Genome U133Plus 2.0 GeneChip microarrays (Affymetrix, Santa Clara, CA) were performed as previously described PMID: 17105813
 
Hybridization protocol mRNA purification, cDNA synthesis, cRNA preparation, and hybridization to the Human Genome U133Plus 2.0 GeneChip microarrays (Affymetrix, Santa Clara, CA) were performed as previously described PMID: 17105814
Scan protocol mRNA purification, cDNA synthesis, cRNA preparation, and hybridization to the Human Genome U133Plus 2.0 GeneChip microarrays (Affymetrix, Santa Clara, CA) were performed as previously described PMID: 17105815
Description Gene expression data from CD138+ selected plasma cells
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
 
Submission date Jul 24, 2009
Last update date Mar 26, 2010
Contact name Yiming Zhou
E-mail(s) yzhou@uams.edu
Phone (501)296-1503 1413
Organization name Myeloma Institute for Research and Therapy
Street address 4301 West Markham St., Slot 776
City Little Rock
State/province AR
ZIP/Postal code 72205
Country USA
 
Platform ID GPL570
Series (1)
GSE17306 Plasma cells from 52 patients with multiple myeloma: mRNA and miRNA expression profiling

Data table header descriptions
ID_REF
VALUE MAS5.0 signal intensity

Data table
ID_REF VALUE
AFFX-BioB-5_at 9.663558104
AFFX-BioB-M_at 10.17579902
AFFX-BioB-3_at 8.951284715
AFFX-BioC-5_at 10.84776207
AFFX-BioC-3_at 11.10440219
AFFX-BioDn-5_at 12.18208393
AFFX-BioDn-3_at 12.93691394
AFFX-CreX-5_at 14.53596181
AFFX-CreX-3_at 14.47437773
AFFX-DapX-5_at 6.240314329
AFFX-DapX-M_at 6.62935662
AFFX-DapX-3_at 3.754887502
AFFX-LysX-5_at 6.089582893
AFFX-LysX-M_at 6.175923742
AFFX-LysX-3_at 6.339850003
AFFX-PheX-5_at 3.722466024
AFFX-PheX-M_at 4.240314329
AFFX-PheX-3_at 5.711494907
AFFX-ThrX-5_at 3.754887502
AFFX-ThrX-M_at 5.965784285

Total number of rows: 54675

Table truncated, full table size 1210 Kbytes.




Supplementary file Size Download File type/resource
GSM432985.cel.gz 5.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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