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Sample GSM433630 Query DataSets for GSM433630
Status Public on Mar 31, 2012
Title miRHuman_36.1.2
Sample type RNA
 
Channel 1
Source name kidney, 36T1.2
Organism Homo sapiens
Characteristics disease state: tumor
Extracted molecule total RNA
Extraction protocol Total RNA was extracted from samples with the mirVana miRNA isolation kit (Ambion) according to manufacturers protocol. The samples were then processed by LC Sciences
Label cy3
Label protocol Per LC Sciences protocol
 
Channel 2
Source name kidney, 36N1.2
Organism Homo sapiens
Characteristics disease state: normal
Extracted molecule total RNA
Extraction protocol Total RNA was extracted from samples with the mirVana miRNA isolation kit (Ambion) according to manufacturers protocol. The samples were then processed by LC Sciences
Label cy5
Label protocol Per LC Sciences protocol
 
 
Hybridization protocol Per LC Sciences protocol
Scan protocol Axon GenePix 4000B Microarray Scanner. Pixel size 10 µm
Description Sample 36 1.2 tumor vs. normal
Data processing ArrayPro. Lowess Global Normalization
 
Submission date Jul 27, 2009
Last update date Jun 27, 2018
Contact name Yidong Chen
E-mail(s) cheny8@uthscsa.edu
Phone 2105629163
Organization name UT Health Science Center at San Antonio
Department Population Health Sciences
Street address 8403 Floyd Curl Drive, MSC 7784
City San Antonio
State/province Texas
ZIP/Postal code 78229
Country USA
 
Platform ID GPL8367
Series (2)
GSE17342 The role of miRNA in Wilms' tumorigenesis
GSE28401 miRNA and Wilms' tumor

Data table header descriptions
ID_REF
VALUE Lowess normalized, log2 transformed ratios (ch1/ch2)
INV_VALUE Lowess normalized, log2 transformed ratios (ch2/ch1)

Data table
ID_REF VALUE INV_VALUE
249 0.417 -0.417
259 0.106 -0.106
269 0.166 -0.166
279 0.447 -0.447
683 0.823 -0.823
693 0.365 -0.365
703 0.034 -0.034
713 0.805 -0.805
1055 0.707 -0.707
1065 0.347 -0.347
1075 0.051 -0.051
1085 0.865 -0.865
2605 0.646 -0.646
2615 0.116 -0.116
2625 -0.975 0.975
2635 -0.046 0.046
3659 0.305 -0.305
3669 0.044 -0.044
3679 -0.106 0.106
3689 0.691 -0.691

Total number of rows: 3903

Table truncated, full table size 67 Kbytes.




Supplementary file Size Download File type/resource
GSM433630.txt.gz 49.9 Kb (ftp)(http) TXT
Processed data included within Sample table
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