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Sample GSM437203 Query DataSets for GSM437203
Status Public on Nov 14, 2009
Title MCC Patient 111
Sample type RNA
 
Source name Moffitt Cancer Center
Organism Homo sapiens
Characteristics age: 67
gender: female
ethnicity: caucasian
ajcc_stage: 3
grade: 3 - Poorly differentiated (PD)
overall_event (death from any cause): no death
dss_event (disease specific survival; death from cancer): no death
dfs_event (disease free survival; cancer recurrence): no recurrence
overall survival follow-up time: 50.59
dss_time: 50.59
dfs_time: 50.59
Extracted molecule total RNA
Extraction protocol RNA was extracted using the Qiagen RNeasy kit.
Label biotin
Label protocol Standard Affymetrix protocols were used.
 
Hybridization protocol Standard Affymetrix protocols for hybridization to the Affy HGU133 2.0 plus array were used.
Scan protocol GeneChip Scanner was used for scanning and generating the raw .CEL files.
Description Gene expression
Data processing Bioconductor's affy package was used for RMA normalization and raw data processing using default settings for background correction and normalization. Cox regression hazards model was applied to the processed data using the survival package. All analyses were performed using R software.
 
Submission date Aug 06, 2009
Last update date Nov 02, 2009
Contact name Pengcheng Lu
E-mail(s) pengcheng.lu@vanderbilt.edu
Organization name Vanderbilt University
Street address 2200 Pierce Avenue
City Nashville
State/province TN
ZIP/Postal code 37232
Country USA
 
Platform ID GPL570
Series (2)
GSE17536 Metastasis Gene Expression Profile Predicts Recurrence and Death in Colon Cancer Patients (Moffitt Samples)
GSE17538 Experimentally Derived Metastasis Gene Expression Profile Predicts Recurrence and Death in Colon Cancer Patients

Data table header descriptions
ID_REF
VALUE RMA normalized signal intensity

Data table
ID_REF VALUE
1007_s_at 11.06740775
1053_at 9.680432097
117_at 9.35820815
121_at 9.954515276
1255_g_at 4.894830285
1294_at 8.681300592
1316_at 6.909089918
1320_at 6.823535839
1405_i_at 9.642903966
1431_at 5.260092308
1438_at 7.612271576
1487_at 8.882022404
1494_f_at 7.063377868
1552256_a_at 9.096962652
1552257_a_at 9.863428551
1552258_at 7.057514158
1552261_at 6.249752115
1552263_at 8.62395762
1552264_a_at 9.059529174
1552266_at 6.652697369

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM437203.CEL.gz 8.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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