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Sample GSM44 Query DataSets for GSM44
Status Public on Jan 24, 2001
Title NHGRI_UACC-647
Sample type RNA
 
Channel 1
Source name melanoma, lymph node
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name NHGRI_Melanoma_Ref
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Biopsy location: axillary lymph node
Patient sex: male
Patient age: 32
Passage number: 14
p16 mutation status: WT
Invasive ability: 3.8 +/- 0.1%
Vasculogenic mimicry: +
Gel contraction: +/-
Cell motility: ND
Scratch wound (%): 55

Form extensive cord-like networks by 5 days.
See http://www.nhgri.nih.gov/DIR/Microarray/Nature_paper.pdf
and http://www.nhgri.nih.gov/DIR/Microarray/Melanoma_Supplement/index.html
Keywords = melanoma, lymph node
 
Submission date Jan 08, 2001
Last update date May 28, 2005
Contact name Michael Bittner
E-mail(s) mbittner@nhgri.nih.gov
Phone 301-496-7980
Fax 301-402-3241
URL http://www.nhgri.nih.gov/Intramural_research/People/bittnerm.html
Organization name NHGRI, NIH
Department Cancer Genetics Branch
Street address
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL7
Series (1)
GSE1 NHGRI_Melanoma_class

Data table header descriptions
ID_REF
CH1_TARGET_TOP Sample 1 (Red Channel) target location in image - top
CH1_TARGET_LT Sample 1 (Red Channel) target location in image - left
CH1_TARGET_BOT Sample 1 (Red Channel) target location in image - bottom
CH1_TARGET_RT Sample 1 (Red Channel) target location in image - right
CH1_RAW Sample 1 (Red Channel) Total Intensity
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_AREA Sample 1 (Red Channel) Area
CH1_BKD_MEAN Sample 1 (Red Channel) Mean Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_TARGET_TOP Sample 2 (Green Channel) target location in image - top
CH2_TARGET_LT Sample 2 Green Channel) target location in image - left
CH2_TARGET_BOT Sample 2 Green Channel) target location in image - bottom
CH2_TARGET_RT Sample 2 Green Channel) target location in image - right
CH2_RAW Sample 2 Green Channel) Total Intensity
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH2_SD Sample 2 Green Channel) Standard Deviation
CH2_AREA Sample 2 Green Channel) Area
CH2_BKD_MEAN Sample 2 Green Channel) Mean Background Level
CH2_BKD_SD Sample 2 Green Channel) Background Standard Deviation
UNION_AREA Union Area
RATIO Raw Ratio
VALUE log ratio of PRE_VALUE
CONF_LEVEL Confidence Level - fixed at 99%
CONF_LOW Confidence Interval - Lower Bound - Raw Ratio
CONF_UP Confidence Interval - Upper Bound - Raw Ratio
NORM_FACTOR M-value
CV Coefficient of variance
PRE_VALUE Calibrated Ratio

Data table
ID_REF CH1_TARGET_TOP CH1_TARGET_LT CH1_TARGET_BOT CH1_TARGET_RT CH1_RAW CH1_MEAN CH1_SD CH1_AREA CH1_BKD_MEAN CH1_BKD_SD CH2_TARGET_TOP CH2_TARGET_LT CH2_TARGET_BOT CH2_TARGET_RT CH2_RAW CH1_MEAN CH2_SD CH2_AREA CH2_BKD_MEAN CH2_BKD_SD UNION_AREA RATIO VALUE CONF_LEVEL CONF_LOW CONF_UP NORM_FACTOR CV PRE_VALUE
1 79 149 97 167 4278534 25014.3 9530.7 154 3509.2 455.4 79 149 97 167 4515432 26163.6 10991.2 150 3939.3 264.4 158 0.956 -0.0947443 99.000 0.515 2.748 1.190 0.202 0.804
2 684 157 702 175 823845 4809.4 2039.5 101 3429.0 467.4 684 157 702 175 699521 3528.0 1822.0 95 3467.2 231.1 108 1.363 0.0591853 99.000 0.515 2.748 1.190 0.202 1.146
3 115 149 133 167 237068 2259.5 1071.5 42 3522.6 467.0 115 149 133 167 236293 1870.2 1165.5 41 3893.0 264.8 49 1.208 0.0064663 99.000 0.515 2.748 1.190 0.202 1.015
4 720 157 738 175 601247 3134.8 1385.3 87 3472.3 500.6 720 157 738 175 583347 2932.2 1274.9 96 3478.2 231.8 99 1.069 -0.0462403 99.000 0.515 2.748 1.190 0.202 0.899
5 152 149 170 167 1228799 6812.8 2904.4 115 3513.3 448.5 152 149 170 167 1289193 6978.6 3139.4 114 3855.0 235.0 127 0.976 -0.0861863 99.000 0.515 2.748 1.190 0.202 0.820
6 756 157 774 175 6823599 52940.9 17898.1 124 3452.5 512.4 756 157 774 175 6373548 49146.0 19971.2 126 3528.0 263.5 129 1.077 -0.0433513 99.000 0.515 2.748 1.190 0.202 0.905
7 188 149 206 167 1220066 6016.5 2024.3 127 3590.3 450.1 188 149 206 167 1229714 5719.6 2013.7 127 3963.2 260.9 135 1.052 -0.0535483 99.000 0.515 2.748 1.190 0.202 0.884
8 793 157 811 175 3107504 26515.3 12067.6 106 3364.6 464.0 793 157 811 175 3178159 27041.0 12510.1 106 3518.3 252.1 112 0.981 -0.0840733 99.000 0.515 2.748 1.190 0.202 0.824
9 225 149 243 167 2366904 13168.4 3975.5 147 3618.2 475.7 225 149 243 167 2661386 14903.4 4989.3 141 3971.7 312.9 149 0.884 -0.1290113 99.000 0.515 2.748 1.190 0.202 0.743
10 829 157 847 175 294029 2222.7 1232.3 49 3325.0 440.9 829 157 847 175 256367 1358.5 733.1 52 3478.6 221.5 61 1.636 0.1383033 99.000 0.515 2.748 1.190 0.202 1.375
11 261 149 279 167 811723 6101.1 3244.5 82 3562.2 498.9 261 149 279 167 1277566 11339.3 7002.4 71 3869.8 290.0 92 0.538 -0.3448623 99.000 0.515 2.748 1.190 0.202 0.452
12 865 157 883 175 401889 2953.0 1502.1 57 3326.5 452.3 865 157 883 175 370455 2284.7 1253.7 69 3503.6 234.3 72 1.292 0.0358303 99.000 0.515 2.748 1.190 0.202 1.086
13 71 762 89 780 933309 8644.3 3156.7 74 3799.8 475.2 71 762 89 780 711653 5372.0 1970.7 82 4116.7 280.3 83 1.609 0.1309773 99.000 0.515 2.748 1.190 0.202 1.352
14 691 761 709 779 5320133 45674.4 15864.2 116 3586.1 505.2 691 761 709 779 4592746 38924.0 17733.6 106 3601.5 270.6 116 1.173 -0.0061233 99.000 0.515 2.748 1.190 0.202 0.986
15 107 762 125 780 1853664 20181.2 7631.3 82 3892.4 512.0 107 762 125 780 1953101 21235.1 6993.8 83 4129.9 282.8 85 0.950 -0.0974533 99.000 0.515 2.748 1.190 0.202 0.799
16 727 761 745 779 1202165 8093.7 2327.1 103 3577.8 493.7 727 761 745 779 1124628 7259.0 2392.3 101 3659.7 279.3 111 1.115 -0.0282603 99.000 0.515 2.748 1.190 0.202 0.937
17 144 762 162 780 926521 8523.0 3528.6 77 3830.6 487.3 144 762 162 780 805553 6604.2 2610.3 78 4136.5 307.1 83 1.291 0.0354303 99.000 0.515 2.748 1.190 0.202 1.085
18 763 761 781 779 1364289 9822.4 2955.9 106 3553.0 466.8 763 761 781 779 1268981 8795.3 3149.9 107 3645.7 260.0 110 1.117 -0.0273343 99.000 0.515 2.748 1.190 0.202 0.939
19 181 762 199 780 713869 3759.3 1365.7 90 3835.1 526.5 181 762 199 780 955861 6043.5 2242.0 99 4125.2 328.7 102 0.622 -0.2814983 99.000 0.515 2.748 1.190 0.202 0.523
20 799 761 817 779 1146893 7005.0 2253.7 110 3516.9 456.9 799 761 817 779 1113079 6533.3 2381.3 110 3678.5 275.0 117 1.072 -0.0452753 99.000 0.515 2.748 1.190 0.202 0.901

Total number of rows: 8192

Table truncated, full table size 1315 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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