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Sample GSM440068 Query DataSets for GSM440068
Status Public on Mar 08, 2010
Title Cercocebus atys 30 dpi SIVsmm LN-FWv-replicate-2
Sample type RNA
 
Source name Lymph node snap-fronzen in liquid nitrogen
Organism Cercocebus atys
Characteristics tissue: Lmyph node
siv infection: 30 dpi
siv type: SIVsmm
Extracted molecule total RNA
Extraction protocol Li et al., The Journal of infectious diseases 2004, 189, 572-582; Li et al., J Immunol 2009, 2009, 183: 1975–1982
Label biotin
Label protocol Li et al., The Journal of infectious diseases 2004, 189, 572-582; Li et al., J Immunol 2009, 2009, 183: 1975–1982
 
Hybridization protocol Li et al., The Journal of infectious diseases 2004, 189, 572-582; Li et al., J Immunol 2009, 2009, 183: 1975–1982
Scan protocol standard Affymetrix protocol
Description FWv
Data processing Cel. files were uploaded into the Expressionist program (Genedata, Pro version 5.1) and the expression level for each of the 47,000 transcripts in the arrays were analyzed using the RMA algorithm
 
Submission date Aug 13, 2009
Last update date Mar 08, 2010
Contact name qingsheng li
E-mail(s) lixxx076@umn.edu
Phone 612-624-9130
Fax 612-626-0623
Organization name University of Minnesota
Department Microbiology
Lab Ashley T. Haase
Street address Box 196, 420 Delaware ST SE
City minneapolis
State/province MN
ZIP/Postal code 55455
Country USA
 
Platform ID GPL3535
Series (1)
GSE17626 Lymphatic Tissues of Sooty Mangabeys and Rhesus Macaques in Early SIV Infection

Data table header descriptions
ID_REF
VALUE RMA signal

Data table
ID_REF VALUE
NC-006150.CDS92.S1_at 15.51
NC-006150.CDS84.S1_at 31.3
NC-006150.CDS76.S1_at 25.93
NC-006150.CDS68.S1_at 111.6
NC-006150.CDS6.S1_at 12.05
NC-006150.CDS52.S1_at 18.28
NC-006150.CDS44.S1_at 34.12
NC-006150.CDS36.S1_at 67.43
NC-006150.CDS28.S1_at 31.83
NC-006150.CDS222.S1_at 134.6
NC-006150.CDS213.S1_at 32.65
NC-006150.CDS21.S1_at 12.57
NC-006150.CDS204.S1_at 36.56
NC-006150.CDS196.S1_at 94.9
NC-006150.CDS188.S1_at 91.24
NC-006150.CDS180.S1_at 123.9
NC-006150.CDS172.S1_at 26.35
NC-006150.CDS164.S1_at 46
NC-006150.CDS156.S1_at 33.55
NC-006150.CDS148.S1_at 29.21

Total number of rows: 52149

Table truncated, full table size 1392 Kbytes.




Supplementary file Size Download File type/resource
GSM440068.CEL.gz 8.5 Mb (ftp)(http) CEL
Processed data included within Sample table
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