|
| Status |
Public on Dec 22, 2009 |
| Title |
Patient 2 |
| Sample type |
RNA |
| |
|
| Source name |
peripheral blood
|
| Organism |
Homo sapiens |
| Characteristics |
disease: type 1 diabetes
gender: female
cell type: endothelial progenitor cell
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was extracted with Trizol reagent, followed by DNase I treatment (Amersam Biosciences) in accordance with the prescribed protocol provided by the manufacturer
|
| Label |
cy3
|
| Label protocol |
Biotinylated cRNA were prepared with the Ambion Illumina® TotalPrepTM RNA Amplification Kit
|
| |
|
| Hybridization protocol |
Standard Illumina hybridization protocol
|
| Scan protocol |
Standard Illumina scanning protocol
|
| Description |
patient 2
|
| Data processing |
The data were normalized using quantile normalisation with IlluminaGUI in R and log2 transformed
|
| |
|
| Submission date |
Aug 13, 2009 |
| Last update date |
Dec 22, 2009 |
| Contact name |
Mario Pescatori |
| E-mail(s) |
mariopescatori@gmail.com
|
| Phone |
00393930761013
|
| Organization name |
Health e-genomics
|
| Street address |
Westplein 11
|
| City |
rotterdam |
| ZIP/Postal code |
3016BM |
| Country |
Netherlands |
| |
|
| Platform ID |
GPL2700 |
| Series (1) |
| GSE17635 |
Folic acid supplementation normalizes the endothelial progenitor cell transcriptome of patients with type 1 diabetes |
|
