NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM440303 Query DataSets for GSM440303
Status Public on Apr 01, 2010
Title no recurrence bone marrow 3
Sample type RNA
 
Source name no recurrence bone marrow 3
Organism Homo sapiens
Characteristics tissue: bone marrow
age: 73y
size of tumor (t factor): T1 (<2cm)
number of lymph node metastasis: 0
stage of disease: 1
recurrence and site: -
clinical outcome: alive
follow up period (months): 52
Extracted molecule total RNA
Extraction protocol ISOGEN, reagent for RNA extraction manufactured by Nippon Gene Co. Ltd.
Label Cy3
Label protocol Total RNA (100 ng) was directly labeled with cyanine 3-CTP (Cy3), without fractionation or amplification.
 
Hybridization protocol According to the Agilent protocol.
Scan protocol According to the Agilent protocol.
Description no additional information
Data processing The scanned images were analyzed with Feature Extraction Software version 9.5.3.1 (Agilent Technologies) with protocol miRNA-v1_95_May07 and Grid: 019118_D_20080214.
 
Submission date Aug 14, 2009
Last update date Nov 22, 2009
Contact name Takehiko Yokobori
Organization name Kyushu university
Department Department of Surgery
Lab Medical Institute of Bioregulation
Street address 4546 Tsurumihara
City Beppu
State/province Oita
ZIP/Postal code 874-0838
Country Japan
 
Platform ID GPL9039
Series (1)
GSE17646 Identification of Recurrence-Related microRNAs in the Bone Marrow of Breast Cancer Patients

Data table header descriptions
ID_REF
VALUE processed Cy3 signal intensity

Data table
ID_REF VALUE
1 3.520748e+003
2 3.583056e+000
3 1.450904e+001
4 4.623328e+001
5 8.032901e+000
6 -1.966807e-001
7 5.675015e-001
8 5.899349e-001
9 1.011363e+000
10 -3.306794e+000
11 -1.642180e+000
12 2.380786e+000
14 1.715374e+000
15 -4.511977e+000
16 -1.339582e+000
17 -2.373918e-003
18 1.317174e+001
19 -3.808452e-001
20 3.080852e+001
21 3.791330e+000

Total number of rows: 13737

Table truncated, full table size 263 Kbytes.




Supplementary file Size Download File type/resource
GSM440303.txt.gz 1.8 Mb (ftp)(http) TXT
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap