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Status |
Public on Jun 01, 2020 |
Title |
GD3_1 |
Sample type |
SRA |
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Source name |
Fungus
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Organism |
Saccharomyces cerevisiae |
Characteristics |
genotype: GD
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Extracted molecule |
total RNA |
Extraction protocol |
Strains were quickly frozen on dry ice, ground to powder with liquid nitrogen, and RNA was harvested using Trizol reagent. RNA libraries were prepared for sequencing using oligo -dT beads
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Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
BGISEQ-500 |
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Description |
GD3_1
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Data processing |
Basecalls performed using BGISEQ-500 SOAPnuke was used to get the "clean reads". Mapping clean reads to ControlSYN3_1 whole genome using BWA. Bowtie2 was used to get the mapping ratio. Fragments Per Kilobase Million (FPKM) was calculated based on the RSEM. Genome_build: R64 Supplementary_files_format_and_content: tab-delimited text files include fpkm values for each Sample ...
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Submission date |
Mar 16, 2020 |
Last update date |
Jun 01, 2020 |
Contact name |
peixia wang |
E-mail(s) |
pxwang@tju.edu.cn
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Organization name |
天津大学
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Street address |
天津市津南区海河教育园区雅观路135号天津大学北洋园校区54教203
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City |
天津市 |
State/province |
505 |
ZIP/Postal code |
300350 |
Country |
China |
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Platform ID |
GPL25927 |
Series (1) |
GSE147008 |
Transcription Analysis of Clustered Essential Genes |
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Relations |
BioSample |
SAMN14381351 |
SRA |
SRX7914816 |
Supplementary data files not provided |
SRA Run Selector |
Raw data are available in SRA |
Processed data are available on Series record |
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