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Sample GSM4426294 Query DataSets for GSM4426294
Status Public on May 04, 2020
Title PATU-8988T_P115_043
Sample type SRA
 
Source name PATU-8988T
Organism Homo sapiens
Characteristics cell line: PATU-8988T
cell type: pancreatic cancer cell line
treatment: BJP-06-115-3
treatment time: 4h
Treatment protocol Cells were plated on Day 0, treated 24 hours later with the indicated compound or DMSO for 4h.
Extracted molecule total RNA
Extraction protocol Cells were lysed in the dish using QIGEN Buffer RLT Plus. RNA was extracted using QIAGEN RNEasy Plus Mini Kit according to protocol.
RNA libraries were prepared for sequencing by Invitrogen
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Ion Torrent S5
 
Data processing Data processing of fastq files to counts was performed by Invitrogen using the Ion Torrent software suite.
Supplementary_files_format_and_content: The csv file contains mapped count values for each transcript for all samples in the study.
 
Submission date Mar 22, 2020
Last update date May 04, 2020
Contact name Zainab Murtaza Doctor
Organization name Dana Farber Cancer Institute
Lab Gray Lab
Street address 360 Longwood Ave, LC-2106
City Boston
State/province MA
ZIP/Postal code 02215
Country USA
 
Platform ID GPL23934
Series (1)
GSE147340 Discovery and Characterization of a Potent and Selective Pin1 Inhibitor Targeted to an Active Cysteine Site
Relations
BioSample SAMN14421570
SRA SRX7966065

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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