NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM45 Query DataSets for GSM45
Status Public on Jan 24, 2001
Title NHGRI_UACC-827
Sample type RNA
 
Channel 1
Source name melanoma, breast
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name NHGRI_Melanoma_Ref
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Biopsy location: right breast
Patient sex: female
Patient age: 32
Passage number: 16
p16 mutation status: mutation
Invasive ability: ND
Vasculogenic mimicry: ND
Gel contraction: ND
Cell motility: ND
Scratch wound (%): 32

See http://www.nhgri.nih.gov/DIR/Microarray/Nature_paper.pdf
and http://www.nhgri.nih.gov/DIR/Microarray/Melanoma_Supplement/index.html
 
Submission date Jan 08, 2001
Last update date May 27, 2005
Contact name Michael Bittner
E-mail(s) mbittner@nhgri.nih.gov
Phone 301-496-7980
Fax 301-402-3241
URL http://www.nhgri.nih.gov/Intramural_research/People/bittnerm.html
Organization name NHGRI, NIH
Department Cancer Genetics Branch
Street address
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL7
Series (1)
GSE1 NHGRI_Melanoma_class

Data table header descriptions
ID_REF
CH1_TARGET_TOP Sample 1 (Red Channel) target location in image - top
CH1_TARGET_LT Sample 1 (Red Channel) target location in image - left
CH1_TARGET_BOT Sample 1 (Red Channel) target location in image - bottom
CH1_TARGET_RT Sample 1 (Red Channel) target location in image - right
CH1_RAW Sample 1 (Red Channel) Total Intensity
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_AREA Sample 1 (Red Channel) Area
CH1_BKD_MEAN Sample 1 (Red Channel) Mean Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_TARGET_TOP Sample 2 (Green Channel) target location in image - top
CH2_TARGET_LT Sample 2 Green Channel) target location in image - left
CH2_TARGET_BOT Sample 2 Green Channel) target location in image - bottom
CH2_TARGET_RT Sample 2 Green Channel) target location in image - right
CH2_RAW Sample 2 Green Channel) Total Intensity
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH2_SD Sample 2 Green Channel) Standard Deviation
CH2_AREA Sample 2 Green Channel) Area
CH2_BKD_MEAN Sample 2 Green Channel) Mean Background Level
CH2_BKD_SD Sample 2 Green Channel) Background Standard Deviation
UNION_AREA Union Area
RATIO Raw Ratio
VALUE log ratio of PRE_VALUE
CONF_LEVEL Confidence Level - fixed at 99%
CONF_LOW Confidence Interval - Lower Bound - Raw Ratio
CONF_UP Confidence Interval - Upper Bound - Raw Ratio
NORM_FACTOR M-value
CV Coefficient of variance
PRE_VALUE Calibrated Ratio

Data table
ID_REF CH1_TARGET_TOP CH1_TARGET_LT CH1_TARGET_BOT CH1_TARGET_RT CH1_RAW CH1_MEAN CH1_SD CH1_AREA CH1_BKD_MEAN CH1_BKD_SD CH2_TARGET_TOP CH2_TARGET_LT CH2_TARGET_BOT CH2_TARGET_RT CH2_RAW CH1_MEAN CH2_SD CH2_AREA CH2_BKD_MEAN CH2_BKD_SD UNION_AREA RATIO VALUE CONF_LEVEL CONF_LOW CONF_UP NORM_FACTOR CV PRE_VALUE
1 73 152 91 170 6763835 51976.2 19971.2 137 456.6 165.0 73 152 91 170 4289228 31193.5 16648.0 128 2056.4 212.4 137 1.666 0.1290453 99.000 0.547 2.799 1.238 0.198 1.346
2 691 156 709 174 34113 4514.7 1149.3 15 358.6 133.1 691 156 709 174 27020 1731.4 249.8 14 2128.6 197.0 15 2.608 0.3236653 99.000 0.547 2.799 1.238 0.198 2.107
3 109 152 127 170 47829 1614.3 772.4 29 378.6 127.9 109 152 127 170 82605 1495.5 658.7 29 1946.4 161.1 32 1.079 -0.0594843 99.000 0.547 2.799 1.238 0.198 0.872
4 727 156 745 174 18315 1323.4 417.2 17 341.6 127.9 727 156 745 174 43437 1784.3 389.2 18 2164.6 172.3 19 0.742 -0.2225733 99.000 0.547 2.799 1.238 0.198 0.599
5 146 152 164 170 83075 1882.7 1091.0 44 303.5 171.7 146 152 164 170 142863 1878.9 1121.0 40 1880.6 186.5 46 1.002 -0.0915153 99.000 0.547 2.799 1.238 0.198 0.810
6 763 157 781 175 526150 13096.4 9534.3 47 394.7 151.7 763 157 781 175 983831 22964.3 16258.8 47 2262.2 211.2 47 0.570 -0.3362993 99.000 0.547 2.799 1.238 0.198 0.461
7 182 152 200 170 1110315 9585.4 4956.4 119 417.4 147.1 182 152 200 170 667315 4054.4 2195.6 97 1957.4 169.7 119 2.364 0.2810333 99.000 0.547 2.799 1.238 0.198 1.910
8 799 157 817 175 559282 13920.1 12529.5 47 420.5 145.3 799 157 817 175 488955 10237.5 8846.3 28 2299.9 208.5 47 1.360 0.0409983 99.000 0.547 2.799 1.238 0.198 1.099
9 219 151 237 169 291396 3319.8 1424.7 86 416.0 153.0 219 151 237 169 358873 2639.5 1168.3 78 1961.5 156.3 86 1.258 0.0068943 99.000 0.547 2.799 1.238 0.198 1.016
10 835 157 853 175 63355 1534.9 574.7 41 384.9 147.9 835 157 853 175 111523 1098.5 419.7 25 2281.0 214.6 41 1.397 0.0526943 99.000 0.547 2.799 1.238 0.198 1.129
11 255 151 273 169 275828 2919.0 2211.9 86 404.2 149.1 255 151 273 169 710723 6532.7 4531.6 78 2030.3 204.0 91 0.447 -0.4424933 99.000 0.547 2.799 1.238 0.198 0.361
12 872 158 890 176 7545 3396.8 230.5 10 375.7 134.4 872 158 890 176 8167 1790.2 303.5 0 2293.3 189.8 10 1.897 0.1855423 99.000 0.547 2.799 1.238 0.198 1.533
13 78 770 96 788 682474 6633.5 1999.9 105 402.3 141.5 78 770 96 788 567985 3959.8 1104.7 104 1895.7 194.4 105 1.675 0.1316193 99.000 0.547 2.799 1.238 0.198 1.354
14 683 767 701 785 547629 9173.3 3524.0 65 434.2 157.1 683 767 701 785 662504 9491.7 4228.8 60 2131.2 211.3 65 0.966 -0.1073493 99.000 0.547 2.799 1.238 0.198 0.781
15 114 770 132 788 1902420 16416.7 6850.8 121 418.9 154.1 114 770 132 788 1448792 10898.1 4545.5 109 1923.1 184.9 121 1.506 0.0852913 99.000 0.547 2.799 1.238 0.198 1.217
16 719 767 737 785 147422 2247.0 1384.9 61 385.6 122.6 719 767 737 785 278047 2904.5 1801.9 63 2060.6 169.5 64 0.774 -0.2041203 99.000 0.547 2.799 1.238 0.198 0.625
17 151 770 169 788 577972 5548.8 2647.9 103 409.6 139.8 151 770 169 788 567797 3885.7 1777.3 99 1967.9 197.2 105 1.428 0.0622063 99.000 0.547 2.799 1.238 0.198 1.154
18 755 767 773 785 211821 3429.4 1471.8 55 421.9 153.6 755 767 773 785 276271 2979.4 1199.3 63 2043.8 163.8 63 1.151 -0.0315173 99.000 0.547 2.799 1.238 0.198 0.930
19 187 770 205 788 333665 2790.5 1345.9 106 449.0 155.2 187 770 205 788 662311 4421.3 1900.6 111 2008.9 212.8 111 0.631 -0.2924303 99.000 0.547 2.799 1.238 0.198 0.510
20 792 768 810 786 167690 2527.3 1456.0 60 414.6 137.8 792 768 810 786 241811 2138.0 1316.6 61 2104.3 167.1 65 1.182 -0.0199973 99.000 0.547 2.799 1.238 0.198 0.955

Total number of rows: 8192

Table truncated, full table size 1324 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap