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Sample GSM4500989 Query DataSets for GSM4500989
Status Public on Mar 07, 2021
Title 22Rv1+R24_2
Sample type RNA
 
Source name 22Rv1 cells
Organism Homo sapiens
Characteristics cell line: 22Rv1
cell type: prostate cancer cell line
arginine sensitivity: highly-sensitive
treatment: with arginine for 24hrs
Treatment protocol 22Rv1 cell line, highly-sensitive to arginine, was treated with or without arginine condition for 24 hours. PC3 cell line, sensitive to arginine, was treated with or without arginine condition for 48 hours.
Growth protocol Both prostate cancer cell lines, 22Rv1 and PC3, are routinely cultured in RPMI-1640 medium with 10% FBS and 1% Pen/Strep.
Extracted molecule total RNA
Extraction protocol The total RNA was extracted by RNeasy Mini kit (Qiagen) with on-column DNase I digestion according to the manufacturer's instructions.
Label biotin
Label protocol Standard Affymetrix protocol.
 
Hybridization protocol Standard Affymetrix protocol.
Scan protocol Standard Affymetrix protocol.
Data processing The data were analyzed with Transcriptome Analysis Console (TAC) using Affymetrix default analysis settings.
 
Submission date Apr 27, 2020
Last update date Mar 08, 2021
Contact name Chia-Lin Chen
E-mail(s) truip75@gamil.com
Organization name National Health Research Institutes
Department Molecular and Genomic Medicine
Lab Hsing-Jien Kung
Street address No.35 Keyan Rd, Zhunan
City Miaoli County
ZIP/Postal code 35053
Country Taiwan
 
Platform ID GPL23159
Series (1)
GSE149427 Arginine effect on prostate cancer cell lines

Data table header descriptions
ID_REF
VALUE RMA
DETECTION P-VALUE

Data table
ID_REF VALUE DETECTION P-VALUE
AFFX-BkGr-GC03_st 8.07685 0.84946
AFFX-BkGr-GC04_st 7.60576 0.99843
AFFX-BkGr-GC05_st 7.51215 0.999991
AFFX-BkGr-GC06_st 7.05596 0.999995
AFFX-BkGr-GC07_st 6.20702 0.999976
AFFX-BkGr-GC08_st 3.41977 0.999969
AFFX-BkGr-GC09_st 2.93627 0.99982
AFFX-BkGr-GC10_st 2.6818 0.999698
AFFX-BkGr-GC11_st 2.57517 0.994723
AFFX-BkGr-GC12_st 2.47442 0.966708
AFFX-BkGr-GC13_st 2.19415 0.983632
AFFX-BkGr-GC14_st 2.14892 0.968984
AFFX-BkGr-GC15_st 2.06234 0.973027
AFFX-BkGr-GC16_st 2.23537 0.930456
AFFX-BkGr-GC17_st 2.32254 0.899185
AFFX-BkGr-GC18_st 2.59963 0.818633
AFFX-BkGr-GC19_st 6.15208 0.632938
AFFX-BkGr-GC20_st 6.04417 0.628488
AFFX-BkGr-GC21_st 6.20293 0.617938
AFFX-BkGr-GC22_st 6.26924 0.612709

Total number of rows: 24351

Table truncated, full table size 900 Kbytes.




Supplementary file Size Download File type/resource
GSM4500989_22Rv1+R24_2.CEL.gz 1.1 Mb (ftp)(http) CEL
GSM4500989_22Rv1+R24_2.sst-rma-gene-full.chp.gz 271.0 Kb (ftp)(http) CHP
Processed data provided as supplementary file
Processed data included within Sample table

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