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Sample GSM4505998 Query DataSets for GSM4505998
Status Public on May 08, 2020
Title cDC2_mock_4
Sample type RNA
 
Source name Lung
Organism Mus musculus
Characteristics strain: C57BL/6
Treatment protocol All Methods listed in Bosteels et al. Inflammatory Type 2 cDCs Acquire Features of cDC1s and Macrophages to Orchestrate Immunity to Respiratory Virus Infection. Immunity. 2020.
Growth protocol All Methods listed in Bosteels et al. Inflammatory Type 2 cDCs Acquire Features of cDC1s and Macrophages to Orchestrate Immunity to Respiratory Virus Infection. Immunity. 2020.
Extracted molecule total RNA
Extraction protocol All Methods listed in Bosteels et al. Inflammatory Type 2 cDCs Acquire Features of cDC1s and Macrophages to Orchestrate Immunity to Respiratory Virus Infection. Immunity. 2020.
Label biotin
Label protocol All Methods listed in Bosteels et al. Inflammatory Type 2 cDCs Acquire Features of cDC1s and Macrophages to Orchestrate Immunity to Respiratory Virus Infection. Immunity. 2020.
 
Hybridization protocol All Methods listed in Bosteels et al. Inflammatory Type 2 cDCs Acquire Features of cDC1s and Macrophages to Orchestrate Immunity to Respiratory Virus Infection. Immunity. 2020.
Scan protocol Affymetrix Gene ChIP Scanner 3000 7G
Description CD172+MAR1- cDC2 in mock condition
CD172+MAR1- cDC2 in mock condition
Data processing Data were processed using limma Bioconductor. Normalisation was done by RMA.
 
Submission date Apr 29, 2020
Last update date May 09, 2020
Contact name Liesbet Martens
E-mail(s) liesbet.martens@irc.vib-ugent.be
Organization name VIB-University of Ghent
Department VIB Inflammation Research Center
Street address Technologiepark 927
City Zwijnaarde
ZIP/Postal code 9052
Country Belgium
 
Platform ID GPL6246
Series (2)
GSE149618 Inflammatory Type 2 cDCs Acquire Features of cDC1s and Macrophages to Orchestrate Immunity to Respiratory Virus Infection (microarray)
GSE149619 Inflammatory Type 2 cDCs Acquire Features of cDC1s and Macrophages to Orchestrate Immunity to Respiratory Virus Infection

Data table header descriptions
ID_REF
VALUE All samples passed quality control, and the Robust Multi-array Average (RMA) procedure was used to normalize data within arrays (probeset summarization, background correction and log2-transformation) and between arrays (quantile normalization).

Data table
ID_REF VALUE
10338001 12.56876335
10338002 5.53394923
10338003 10.8782996
10338004 9.87748816
10338005 2.157430543
10338006 2.418170972
10338007 2.669385611
10338008 3.332665239
10338009 7.475227997
10338010 2.214637056
10338011 5.026116051
10338012 2.296973393
10338013 2.047135982
10338014 2.120622332
10338015 2.054205997
10338016 6.777461497
10338017 13.03642256
10338018 5.997784128
10338019 4.442673796
10338020 7.478186985

Total number of rows: 35556

Table truncated, full table size 725 Kbytes.




Supplementary file Size Download File type/resource
GSM4505998_cDC2_mock_4.CEL.gz 3.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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