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Sample GSM4506005 Query DataSets for GSM4506005
Status Public on May 08, 2020
Title MC_mock_1
Sample type RNA
 
Source name Lung
Organism Mus musculus
Characteristics strain: C57BL/6
Treatment protocol All Methods listed in Bosteels et al. Inflammatory Type 2 cDCs Acquire Features of cDC1s and Macrophages to Orchestrate Immunity to Respiratory Virus Infection. Immunity. 2020.
Growth protocol All Methods listed in Bosteels et al. Inflammatory Type 2 cDCs Acquire Features of cDC1s and Macrophages to Orchestrate Immunity to Respiratory Virus Infection. Immunity. 2020.
Extracted molecule total RNA
Extraction protocol All Methods listed in Bosteels et al. Inflammatory Type 2 cDCs Acquire Features of cDC1s and Macrophages to Orchestrate Immunity to Respiratory Virus Infection. Immunity. 2020.
Label biotin
Label protocol All Methods listed in Bosteels et al. Inflammatory Type 2 cDCs Acquire Features of cDC1s and Macrophages to Orchestrate Immunity to Respiratory Virus Infection. Immunity. 2020.
 
Hybridization protocol All Methods listed in Bosteels et al. Inflammatory Type 2 cDCs Acquire Features of cDC1s and Macrophages to Orchestrate Immunity to Respiratory Virus Infection. Immunity. 2020.
Scan protocol Affymetrix Gene ChIP Scanner 3000 7G
Description CD64+ monocyte-derived cell in mock condition
CD64+ monocyte-derived cell in mock condition
Data processing Data were processed using limma Bioconductor. Normalisation was done by RMA.
 
Submission date Apr 29, 2020
Last update date May 09, 2020
Contact name Liesbet Martens
E-mail(s) liesbet.martens@irc.vib-ugent.be
Organization name VIB-University of Ghent
Department VIB Inflammation Research Center
Street address Technologiepark 927
City Zwijnaarde
ZIP/Postal code 9052
Country Belgium
 
Platform ID GPL6246
Series (2)
GSE149618 Inflammatory Type 2 cDCs Acquire Features of cDC1s and Macrophages to Orchestrate Immunity to Respiratory Virus Infection (microarray)
GSE149619 Inflammatory Type 2 cDCs Acquire Features of cDC1s and Macrophages to Orchestrate Immunity to Respiratory Virus Infection

Data table header descriptions
ID_REF
VALUE All samples passed quality control, and the Robust Multi-array Average (RMA) procedure was used to normalize data within arrays (probeset summarization, background correction and log2-transformation) and between arrays (quantile normalization).

Data table
ID_REF VALUE
10338001 12.51775232
10338002 5.547657959
10338003 10.78921805
10338004 9.693855131
10338005 2.192683674
10338006 2.374079186
10338007 2.68817707
10338008 3.32111676
10338009 7.392958363
10338010 2.238829857
10338011 4.968796304
10338012 2.313281351
10338013 2.103350205
10338014 2.147878055
10338015 2.110291727
10338016 6.709978325
10338017 12.97482322
10338018 5.911698534
10338019 4.479263436
10338020 7.420797339

Total number of rows: 35556

Table truncated, full table size 725 Kbytes.




Supplementary file Size Download File type/resource
GSM4506005_MC_mock_1.CEL.gz 3.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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