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Sample GSM45177 Query DataSets for GSM45177
Status Public on May 30, 2005
Title HSF-ChIP Chromatin-C-IP1-2
Sample type genomic
 
Channel 1
Source name pre-immune sera chromatin
Organism Drosophila melanogaster
Extracted molecule genomic DNA
 
Channel 2
Source name anti-HSF enriched chromatin
Organism Drosophila melanogaster
Extracted molecule genomic DNA
 
 
Description Chromatin Immunopurification with anti-Heat Shock Facotor from heat shocked Drosophila embryos
 
Submission date Mar 11, 2005
Last update date May 29, 2005
Contact name Steve Russell
E-mail(s) s.russell@gen.cam.ac.uk
Phone +44 (0) 1223 766929
Fax +44 (0) 1223 333992
Organization name University of Cambridge
Department Department of Genetics
Street address Downing Street
City Cambridge
ZIP/Postal code CB2 3EH
Country United Kingdom
 
Platform ID GPL1898
Series (1)
GSE2398 Drosophila HSF chromatin IP -cDNA array

Data table header descriptions
ID_REF
VALUE VSN normalised ratio anti-HSF to pre-immune
fgMedian1 foreground (spot) median pixel intensity of channel 1
bgMedian1 background (local area around spot) median pixel intensity of channel 1
fgAdjMAD1 foreground (spot) pixel intensity variability of channel 1
bgAdjMAD1 background (local area around spot) pixel intensity variability of channel 1
fgMedian2 foreground (spot) median pixel intensity of channel 2
bgMedian2 background (local area around spot) median pixel intensity of channel 2
fgAdjMAD2 foreground (spot) pixel intensity variability of channel 2
bgAdjMAD2 background (local area around spot) pixel intensity variability of channel 2
fgN number of pixels in the foreground
bgN number of pixels in the background

Data table
ID_REF VALUE fgMedian1 bgMedian1 fgAdjMAD1 bgAdjMAD1 fgMedian2 bgMedian2 fgAdjMAD2 bgAdjMAD2 fgN bgN
1000000200 0.058285736 1170 415 289.107 84.5082 616 81 166.051 29.652 349 3095
1000000206 -0.40315045 2203 516 876.217 91.9212 1864 122 560.423 42.9954 349 3095
1000000207 0.76419335 1671 483 535.219 88.956 596 103 229.803 38.5476 349 3095
1000000211 -0.620870809 759 420 235.733 77.0952 518 77 179.395 26.6868 349 3095
1000000215 0.078167558 1030 451 220.907 87.4734 509 84 128.986 29.652 349 3095
1000000216 0.217553369 1908 545 555.975 123.056 1023 132 333.585 53.3736 421 2983
1000000217 -0.812820017 1080 641 321.724 149.743 1011 284 299.485 109.712 489 2871
1000000224 0.361441963 1274 424 415.128 99.3342 559 78 225.355 32.6172 421 2983
1000000225 0.031520525 956 401 277.246 74.13 472 66 140.847 23.7216 421 2983
1000000227 -0.50343796 1034 388 312.829 74.13 767 66 237.216 22.239 489 2871
1000000230 -0.066131042 1110 490 298.003 96.369 625 115 177.912 42.9954 349 3095
1000000233 0.134588653 2201 414 548.562 78.5778 1282 74 317.276 26.6868 421 2983
1000000234 0.471664559 2370 405 563.388 74.13 1105 69 296.52 23.7216 577 2759
1000000235 -0.507770739 816 395 203.116 72.6474 539 68 136.399 23.7216 293 3179
1000000236 0.057542082 797 397 174.947 72.6474 350 71 87.4734 25.2042 293 3179
1000000238 -0.114032802 876 398 200.151 74.13 458 71 117.125 23.7216 421 2983
1000000241 -0.580525825 1338 608 381.028 131.951 1147 242 342.481 85.9908 421 2983
1000000242 -0.697191545 1129 487 324.689 97.8516 992 153 295.037 50.4084 489 2871
1000000243 -1.332117327 979 430 296.52 84.5082 1261 89 370.65 34.0998 421 2983
1000000247 0.071921209 1505 418 303.933 77.0952 847 74 173.464 28.1694 293 3179

Total number of rows: 5364

Table truncated, full table size 420 Kbytes.




Supplementary data files not provided
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