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Sample GSM45481 Query DataSets for GSM45481
Status Public on Jun 03, 2005
Title SAGE_Drosophila_Pooled_Set
Sample type SAGE
Anchor NlaIII
Tag Count 78912
Tag Length 10
 
Source name Drosophila melanogaster strain (y: cn bw sp) pooled set
Organism Drosophila melanogaster
Extracted molecule polyA RNA
 
Description Pooled set - embryo (0 to 24 hour), larvae (2nd and 3rd day), pupae (3rd day), and young and aged adults (10 males and 10 females, up to 10 day)
Lee S et al. Detecting novel low-abundant transcripts in Drosophila. RNA. 2005 Jun;11(6):939-46.
 
Submission date Mar 16, 2005
Last update date Nov 19, 2008
Contact name San Ming Wang
E-mail(s) swang1@northwestern.edu
Phone 224-364-7491
Fax 224-364-5003
Organization name ENH Research Institute, Northwestern University
Department Center for Functional Genomics
Street address 1001 University Place
City Evanston
State/province IL
ZIP/Postal code 60062
Country USA
 
Platform ID GPL1882
Series (1)
GSE2347 Detecting novel low-abundant transcripts in Drosophila

Data table header descriptions
TAG Ten base SAGE tag;
COUNT Absolute tag count
TPM tags per million

Data table
TAG COUNT TPM
AAAAACACGC 2411 30553.02
CTGTTATGTA 957 12127.43
GTTGCAACGG 731 9263.48
GCCGGCCAGT 568 7197.89
CATCTAATCT 553 7007.81
GGCTTCGGTC 495 6272.81
GATCCAGCCA 471 5968.67
GCGCAGACTT 465 5892.64
GCGATGGCGG 415 5259.02
CCTGCCGTGG 357 4524.03
ATCTTGAGTT 356 4511.35
ATTTGAGTTC 355 4498.68
ATCCTGAGTT 349 4422.65
GGAAAAAGCT 303 3839.72
TTATAGCGAG 293 3713.00
GAAATTTGTT 291 3687.65
CTCACTGAAT 290 3674.98
TACGTTTCCA 290 3674.98
CCACGTCGAG 278 3522.91
AAAAAACACG 274 3472.22

Total number of rows: 19444

Table truncated, full table size 363 Kbytes.




Supplementary data files not provided
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