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Sample GSM457306 Query DataSets for GSM457306
Status Public on Sep 30, 2009
Title Collie
Sample type genomic
 
Channel 1
Source name Pedigree Collie
Organism Canis lupus familiaris
Characteristics pedigree: Collie
tissue: blood
cell line: n/a
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from Blood samples using standard molecular biology protocols
Label Cy3
Label protocol Labeling was performed by NimbleGen using standard protocols
 
Channel 2
Source name Pedigree Boxer Reference
Organism Canis lupus familiaris
Characteristics pedigree: Boxer
tissue: blood
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from Blood samples using standard molecular biology protocols
Label Cy5
Label protocol Labeling was performed by NimbleGen using standard protocols
 
 
Hybridization protocol Hybridization was performed by NimbleGen using standard protocols
Scan protocol Scanning was performed by NimbleGen using standard protocols
Description CNV Profile of Pedigree Collie
Data processing Data processing was performed by NimbleGen using standard protocols
 
Submission date Sep 29, 2009
Last update date Sep 29, 2009
Contact name Bradley P Coe
E-mail(s) bcoe@bccrc.ca
Organization name BC Cancer Research Centre
Department Cancer Genetics and Developmental Biology
Lab Wan Lam Lab
Street address 675 West 10th Ave
City Vancouver
State/province BC
ZIP/Postal code V5Z1L3
Country Canada
 
Platform ID GPL9314
Series (1)
GSE18317 Mapping DNA structural variation in dogs

Data table header descriptions
ID_REF
VALUE normalized (by spatial correction) log2 ratios generated by NimbleGens software

Data table
ID_REF VALUE
CHR10FS003017976 -0.08
CHR10FS003031401 -0.07
CHR10FS003049456 0.24
CHR10FS003053856 3.00E-03
CHR10FS003063181 0.01
CHR10FS003071906 0.24
CHR10FS003090081 -0.01
CHR10FS003094256 -0.11
CHR10FS003099761 0.23
CHR10FS003108386 0.13
CHR10FS003132997 -0.04
CHR10FS003141614 0.3
CHR10FS003146476 -0.05
CHR10FS003151021 0.27
CHR10FS003155121 0.38
CHR10FS003159653 -0.19
CHR10FS003164384 -0.04
CHR10FS003173074 0.07
CHR10FS003177856 0.19
CHR10FS003182056 -0.3

Total number of rows: 389319

Table truncated, full table size 8424 Kbytes.




Supplementary file Size Download File type/resource
GSM457306_115109_532.pair.gz 6.4 Mb (ftp)(http) PAIR
GSM457306_115109_635.pair.gz 6.4 Mb (ftp)(http) PAIR
Processed data included within Sample table

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