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Sample GSM46 Query DataSets for GSM46
Status Public on Jan 24, 2001
Title NHGRI_UACC-903
Sample type RNA
 
Channel 1
Source name melanoma, back
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name NHGRI_Melanoma_Ref
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Biopsy location: back
Patient sex: male
Patient age: 25
Passage number: 14
p16 mutation status: deleted
Invasive ability: 3.8 +/- 0.3%
Vasculogenic mimicry: +
Gel contraction: -
Cell motility: ND
Scratch wound (%): 91

See http://www.nhgri.nih.gov/DIR/Microarray/Nature_paper.pdf
and http://www.nhgri.nih.gov/DIR/Microarray/Melanoma_Supplement/index.html
 
Submission date Jan 08, 2001
Last update date May 27, 2005
Contact name Michael Bittner
E-mail(s) mbittner@nhgri.nih.gov
Phone 301-496-7980
Fax 301-402-3241
URL http://www.nhgri.nih.gov/Intramural_research/People/bittnerm.html
Organization name NHGRI, NIH
Department Cancer Genetics Branch
Street address
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL7
Series (1)
GSE1 NHGRI_Melanoma_class

Data table header descriptions
ID_REF
CH1_TARGET_TOP Sample 1 (Red Channel) target location in image - top
CH1_TARGET_LT Sample 1 (Red Channel) target location in image - left
CH1_TARGET_BOT Sample 1 (Red Channel) target location in image - bottom
CH1_TARGET_RT Sample 1 (Red Channel) target location in image - right
CH1_RAW Sample 1 (Red Channel) Total Intensity
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_AREA Sample 1 (Red Channel) Area
CH1_BKD_MEAN Sample 1 (Red Channel) Mean Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_TARGET_TOP Sample 2 (Green Channel) target location in image - top
CH2_TARGET_LT Sample 2 Green Channel) target location in image - left
CH2_TARGET_BOT Sample 2 Green Channel) target location in image - bottom
CH2_TARGET_RT Sample 2 Green Channel) target location in image - right
CH2_RAW Sample 2 Green Channel) Total Intensity
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH2_SD Sample 2 Green Channel) Standard Deviation
CH2_AREA Sample 2 Green Channel) Area
CH2_BKD_MEAN Sample 2 Green Channel) Mean Background Level
CH2_BKD_SD Sample 2 Green Channel) Background Standard Deviation
UNION_AREA Union Area
RATIO Raw Ratio
VALUE log ratio of PRE_VALUE
CONF_LEVEL Confidence Level - fixed at 99%
CONF_LOW Confidence Interval - Lower Bound - Raw Ratio
CONF_UP Confidence Interval - Upper Bound - Raw Ratio
NORM_FACTOR M-value
CV Coefficient of variance
PRE_VALUE Calibrated Ratio

Data table
ID_REF CH1_TARGET_TOP CH1_TARGET_LT CH1_TARGET_BOT CH1_TARGET_RT CH1_RAW CH1_MEAN CH1_SD CH1_AREA CH1_BKD_MEAN CH1_BKD_SD CH2_TARGET_TOP CH2_TARGET_LT CH2_TARGET_BOT CH2_TARGET_RT CH2_RAW CH1_MEAN CH2_SD CH2_AREA CH2_BKD_MEAN CH2_BKD_SD UNION_AREA RATIO VALUE CONF_LEVEL CONF_LOW CONF_UP NORM_FACTOR CV PRE_VALUE
1 72 157 90 175 5820554 47562.2 22017.8 121 1350.0 261.5 72 157 90 175 5211282 42952.5 23160.2 126 839.8 129.6 127 1.107 0.0902583 99.000 0.496 1.630 0.899 0.152 1.231
2 687 163 705 181 464549 3334.0 1271.1 102 1455.2 223.9 687 163 705 181 567131 4807.3 1630.0 104 1039.4 134.6 105 0.694 -0.1129463 99.000 0.496 1.630 0.899 0.152 0.771
3 108 157 126 175 155940 1531.3 2220.9 27 1253.3 215.7 108 157 126 175 213236 2929.6 4441.6 64 878.1 127.4 64 0.523 -0.2358243 99.000 0.496 1.630 0.899 0.152 0.581
4 723 163 741 181 618810 3534.0 1529.6 112 1497.0 233.8 723 163 741 181 918076 6354.0 2735.4 131 1110.0 163.3 131 0.556 -0.2090123 99.000 0.496 1.630 0.899 0.152 0.618
5 145 157 163 175 413602 4160.2 2499.9 81 1211.2 199.8 145 157 163 175 556486 6363.8 4551.5 81 863.3 139.8 85 0.654 -0.1384663 99.000 0.496 1.630 0.899 0.152 0.727
6 760 163 778 181 3922087 26694.9 14908.6 141 1726.0 388.5 760 163 778 181 5053154 35216.6 19544.6 146 1400.4 422.3 146 0.758 -0.0741723 99.000 0.496 1.630 0.899 0.152 0.843
7 181 157 199 175 919754 7457.9 3592.4 103 1301.7 221.6 181 157 199 175 1090783 9477.3 4644.9 113 911.1 139.8 113 0.787 -0.0579923 99.000 0.496 1.630 0.899 0.152 0.875
8 796 163 814 181 4597332 33045.7 16883.0 140 1782.6 310.9 796 163 814 181 4752525 34602.9 17291.8 138 1401.1 314.0 140 0.955 0.0261253 99.000 0.496 1.630 0.899 0.152 1.062
9 218 156 236 174 728889 6485.7 3870.8 87 1351.9 254.5 218 156 236 174 794848 7627.7 4819.2 97 919.0 143.7 101 0.850 -0.0245683 99.000 0.496 1.630 0.899 0.152 0.945
10 833 163 851 181 925689 5872.9 3894.9 93 1653.0 270.7 833 163 851 181 1175127 8295.7 4959.0 131 1258.2 175.9 131 0.708 -0.1040253 99.000 0.496 1.630 0.899 0.152 0.787
11 254 156 272 174 1846959 14559.1 8271.7 118 1363.0 221.5 254 156 272 174 2382758 19555.7 12091.9 122 985.3 167.8 124 0.744 -0.0819703 99.000 0.496 1.630 0.899 0.152 0.828
12 869 163 887 181 131618 3805.2 3640.6 21 1678.9 363.3 869 163 887 181 155680 5194.1 3795.8 32 1292.5 210.1 32 0.733 -0.0888423 99.000 0.496 1.630 0.899 0.152 0.815
13 78 777 96 795 988380 6904.3 3271.4 120 1264.1 234.3 78 777 96 795 999687 7452.8 3996.6 125 809.1 141.9 129 0.926 0.0128373 99.000 0.496 1.630 0.899 0.152 1.030
14 679 773 697 791 1636280 14278.5 7779.3 97 1454.9 248.5 679 773 697 791 2143888 19581.5 11311.1 112 1032.8 137.6 112 0.729 -0.0909793 99.000 0.496 1.630 0.899 0.152 0.811
15 114 777 132 795 2147735 14051.6 5996.8 142 1289.3 297.3 114 777 132 795 2446977 16660.1 9420.9 144 818.3 116.7 148 0.843 -0.0277973 99.000 0.496 1.630 0.899 0.152 0.938
16 715 773 733 791 410050 4130.5 1682.9 76 1410.7 215.1 715 773 733 791 483987 5452.9 2428.4 80 1087.5 155.6 82 0.757 -0.0746883 99.000 0.496 1.630 0.899 0.152 0.842
17 151 777 169 795 1120426 8274.4 4086.9 117 1301.9 236.7 151 777 169 795 1229196 9597.9 4979.3 122 908.0 167.1 125 0.862 -0.0181813 99.000 0.496 1.630 0.899 0.152 0.959
18 752 773 770 791 674951 6836.1 3948.7 79 1496.6 239.7 752 773 770 791 772682 8448.7 4865.8 89 1090.6 156.1 89 0.809 -0.0457573 99.000 0.496 1.630 0.899 0.152 0.900
19 187 777 205 795 906627 6452.5 3643.5 110 1363.3 244.0 187 777 205 795 1221670 9524.8 5227.7 124 1006.8 174.6 124 0.677 -0.1232053 99.000 0.496 1.630 0.899 0.152 0.753
20 788 772 806 790 426216 4754.1 2855.1 67 1513.8 208.9 788 772 806 790 595641 7592.3 4274.3 75 1167.1 192.5 76 0.626 -0.1573913 99.000 0.496 1.630 0.899 0.152 0.696

Total number of rows: 8192

Table truncated, full table size 1348 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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